PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01202.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 145aa    MW: 15972 Da    PI: 10.2721
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01202.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.32.2e-152584463
                    XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                     ++ +r+ +NRe+ArrsR+RK++++eeL  +v+ L+aeN + ++++ +   e +k++ e+
  Pahal.C01202.1 25 ERKRKRMLSNRESARRSRARKQQRLEELVAEVARLQAENAQVQSRIATFDREFSKVDGEN 84
                    46789999**************************************99999999887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.2E-192286IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.3E-132479No hitNo description
PROSITE profilePS5021712.072487IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-112678No hitNo description
PfamPF001701.2E-112680IPR004827Basic-leucine zipper domain
PROSITE patternPS0003602944IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MSSRRSSSPE SNTDSGSGGG FAADERKRKR MLSNRESARR SRARKQQRLE ELVAEVARLQ  60
AENAQVQSRI ATFDREFSKV DGENAVLRAR HGELAGRLES LGSVLEVLQM AGAPVDIPEI  120
PDPLLRPWQP PFPMQPIAAD AFQF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13845RRSRARKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807736.14e-99bZIP transcription factor 53-like
TrEMBLA0A2S3H7P69e-98A0A2S3H7P6_9POAL; Uncharacterized protein
TrEMBLA0A2T7E7P99e-98A0A2T7E7P9_9POAL; Uncharacterized protein
STRINGSi023562m3e-79(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188635100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.15e-30basic region/leucine zipper motif 53