PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C01320.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 191aa MW: 21693.3 Da PI: 9.7451

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C01320.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.2	5.2e-15	23	69	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+ WTteE+ +++++ +++G g+Wk I+r++ +++t+ q+ s+ qky Pahal.C01320.1 23 RLLWTTEEHRQFLRGLHMYGRGDWKNISRHFVTTKTPVQVSSHTQKY 69 677*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.759	18	74	IPR017930	Myb domain
SMART	SM00717	1.7E-10	22	72	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	3.4E-14	22	72	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.58E-16	22	75	IPR009057	Homeodomain-like
Pfam	PF00249	8.3E-12	25	69	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-9	25	70	IPR009057	Homeodomain-like
CDD	cd00167	9.62E-10	26	65	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MVEEPSQRQR QVIIPQQERL HRRLLWTTEE HRQFLRGLHM YGRGDWKNIS RHFVTTKTPV 60 QVSSHTQKYF RRVERTTEKQ RCSINDVGLY DAEPLARSNS FSLEALAFVG GANKQNGYGS 120 GSQLATMNNL AQIWSPFSYM TDQASNSQAT TWIVQQTGFS SSATLAPEGP KIQMAWIGDQ 180 PGDFLPEQKM *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806558.1	1e-116	uncharacterized protein LOC112885100
TrEMBL	A0A2S3H852	1e-141	A0A2S3H852_9POAL; Uncharacterized protein
STRING	Pavir.Ca01212.1.p	6e-99	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP842	30	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	3e-23	MYB family protein

Link Out ? help Back to Top
Phytozome	Pahal.C01320.1