PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C01321.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 240aa MW: 27146.5 Da PI: 6.9683

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C01321.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.1	2.2e-09	109	149	7	47
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +E +++++ +++G g+Wk I+r++ +++t+ q+ ++ qky Pahal.C01321.1 109 QERRQFLRGLHMYGRGDWKNISRHFVTTKTPVQVSDHAQKY 149 7999************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.7E-7	102	152	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	2.1E-8	109	152	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-7	109	149	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-6	109	149	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.58E-11	109	155	IPR009057	Homeodomain-like
CDD	cd00167	3.69E-7	110	150	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MDPKFNGEWS TFEISTVKSL IASHNAWFPM KEKHQEIKLY VELVVEMTML RNQSMVAINN 60 LVNDNYGIPM EDPTMDNVDM SLASLTYKKP EAIRVVEEAP QQQVIIPQQE RRQFLRGLHM 120 YGRGDWKNIS RHFVTTKTPV QVSDHAQKYF HRIERTTEKQ CYSINDIGLN DAKSWVHNNS 180 TSREALAFAG GTYNPNGHGP SSELATMNNF AQAWSPFLYS AGQASSSQPT SWIGQQMGG*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806559.1	1e-132	myb-like protein I
TrEMBL	A0A2T7E832	1e-149	A0A2T7E832_9POAL; Uncharacterized protein
STRING	Pavir.Ca01211.1.p	1e-107	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP842	30	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	1e-19	MYB family protein

Link Out ? help Back to Top
Phytozome	Pahal.C01321.1