PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C01483.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 248aa MW: 25676.1 Da PI: 9.2581

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C01483.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130	1.1e-40	60	159	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf +p+kfa+vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l+aela Pahal.C01483.1 60 PCAACKLLRRRCAQECPFSPYFSPLEPHKFAAVHKVFGASNVSKMLLEVHESQRADAANSLVYEANLRLRDPVYGCMGAILTLQQQVQALEAELA 154 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e Pahal.C01483.1 155 TVRAE 159 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.397	59	160	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-40	60	157	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MSTASEWPDH ELGKKIKRES AAAAADRMTA ARRSCSLPAG AGATAAAGAG PGSALNTITP 60 CAACKLLRRR CAQECPFSPY FSPLEPHKFA AVHKVFGASN VSKMLLEVHE SQRADAANSL 120 VYEANLRLRD PVYGCMGAIL TLQQQVQALE AELATVRAEI VRHRYRPAAA AASPVATVLP 180 SSHASQLLAA SAVSRGLHLH AGRPVGTRTA TLAAASSSSS SVVYAAAAAS SSTDYSSITN 240 ENVPYFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-39	60	163	11	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-39	60	163	11	114	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095831	1e-140	FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808904.1	1e-178	LOB domain-containing protein 15-like isoform X1
Swissprot	Q9AT61	2e-70	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A3L6SWK5	1e-119	A0A3L6SWK5_PANMI; LOB domain-containing protein 15-like
STRING	Pavir.J00291.1.p	1e-125	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	6e-56	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Pahal.C01483.1

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]