PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01572.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 201aa    MW: 21381.4 Da    PI: 7.3754
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01572.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.2e-30107165159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYG+K vk+s++pr+YYrC+s+gC vkk+ver+++dp++v++tY g Hnh 
  Pahal.C01572.1 107 LDDGFKWRKYGKKAVKNSPNPRNYYRCSSEGCGVKKRVERDRDDPRYVITTYDGVHNHA 165
                     59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-3395167IPR003657WRKY domain
SuperFamilySSF1182906.15E-2899167IPR003657WRKY domain
PROSITE profilePS5081131.996102167IPR003657WRKY domain
SMARTSM007741.2E-35107166IPR003657WRKY domain
PfamPF031061.6E-24108164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAASLGLNPE ALFSSYSSSY SSPFMSGYAP QSFPAANNTV DDAAAFSSEL DDLCQLEYSP  60
TPLVAGAGGG SGDDRNDKSM WCGGGDEKRP RSSGRIGFRT RSEVEILDDG FKWRKYGKKA  120
VKNSPNPRNY YRCSSEGCGV KKRVERDRDD PRYVITTYDG VHNHASPGAA AVIQYGGGGL  180
YSPQHSGSPS AASYSGSFLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2892167277Probable WRKY transcription factor 4
2lex_A3e-2892167277Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586090.0KU058609.1 UNVERIFIED: Panicum miliaceum WRKY15-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809689.11e-145probable WRKY transcription factor 51
TrEMBLA0A2S3H9031e-144A0A2S3H903_9POAL; Uncharacterized protein
TrEMBLA0A2T7E8Z31e-144A0A2T7E8Z3_9POAL; Uncharacterized protein
STRINGPavir.J05732.1.p1e-122(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.16e-42WRKY DNA-binding protein 50