PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01598.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 425aa    MW: 46736 Da    PI: 8.0968
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01598.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.72.5e-32491951128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 
                     lp+G++F+P+d+el+ e+L+  ve+        +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r        
  Pahal.C01598.1  49 LPAGVKFDPSDQELI-EHLASLVEEGGsrahplI---NdfipTIQGDdGICYTHPENLP-GVTRNGLSKHFFHRPSKAYTTGTRKRRRiqsergs 138
                     799************.99****999985665442...133333655546**********.455556789******************76899999 PP

             NAM  78 .....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                          + +++W++tgk+++v++ +g+++g kk+Lv+y   g++ k++kt+Wvmh+y+l
  Pahal.C01598.1 139 hgsedVGEARWHKTGKTRPVIV-GGRQKGSKKILVLYsnYGKQGKPKKTNWVMHQYHL 195
                     9988877999************.99************5557999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-3544213IPR003441NAC domain
PROSITE profilePS5100532.18249213IPR003441NAC domain
PfamPF023651.0E-1350195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MNRGHSGSMI SSCGTSELTD EKKDSQTSAS QHCPSCGHSL DCNPDMIGLP AGVKFDPSDQ  60
ELIEHLASLV EEGGSRAHPL INDFIPTIQG DDGICYTHPE NLPGVTRNGL SKHFFHRPSK  120
AYTTGTRKRR RIQSERGSHG SEDVGEARWH KTGKTRPVIV GGRQKGSKKI LVLYSNYGKQ  180
GKPKKTNWVM HQYHLGDQEE KDGELVVSKV FYQTQLRSTT ATVEHHTMDG EKVAEASKAM  240
QNVLSSFAAD ATAVTVAMVP HRQQKRQRQA DGHCSFAPAK MSHEVGVVGG QVAGDQGEKR  300
DSHHVPSQHN VLSDLHAKPV PTMSFHVGTP LNTVSTAISP EAQDRSVVLD SRFYYPAILR  360
RNEKNQEQQQ KVGRRSAEME GLIIACQSAS TEAGASPESK EVQRPYHQHW PPDHSQDQHQ  420
LQCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-124719513140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126130RKRRR
2127131KRRRI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808650.10.0NAC domain-containing protein 10-like isoform X2
TrEMBLA0A2S3H8Q70.0A0A2S3H8Q7_9POAL; Uncharacterized protein
STRINGPavir.J36494.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.17e-97NAC domain containing protein 75