PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01726.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 302aa    MW: 31114.8 Da    PI: 8.6458
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01726.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.9e-14146190347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++++ ++lG g+W+ I+r + ++Rt+ q+ s+ qk+
   Pahal.C01726.1 146 PWSEEEHRLFLEGLEKLGRGDWRGISRGFVTTRTPTQVASHAQKF 190
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575122No hitNo description
PROSITE profilePS5129417.898139195IPR017930Myb domain
SuperFamilySSF466895.61E-17141196IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-17142194IPR006447Myb domain, plants
SMARTSM007176.6E-11143193IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-10143186IPR009057Homeodomain-like
PfamPF002495.7E-11146189IPR001005SANT/Myb domain
CDDcd001676.57E-10146191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MHTVASRCSR CGGGCGHSSI ACRVAAAAGQ RGGEAATMRC SGGAAAAGPR LFGVQLGAAA  60
GGGSASPALQ LHKSYSVDCL NLQGSAPAYA ALVAAPLLLS PSPSSAALLL SIDECSTERA  120
TDGGGYLSDD GARGGTALRE RKKGVPWSEE EHRLFLEGLE KLGRGDWRGI SRGFVTTRTP  180
TQVASHAQKF FLRQNSAGKK SNAKRRSSLF DMVQNYEGGL VSDPSDGKAA AGTSESLSPK  240
ASCDVYRKES TAIHERMTRH SSESASVSEK VTVATEQAHG YHCSPLNLEL GMALSTPSIG  300
T*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1846734e-82KF184673.1 Saccharum hybrid cultivar R570 clone BAC 008G08 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807743.10.0transcription factor MYBS3-like
TrEMBLA0A2S3H9450.0A0A2S3H945_9POAL; Uncharacterized protein
STRINGPavir.J35324.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.16e-40MYB_related family protein