PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01779.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 323aa    MW: 34596.8 Da    PI: 5.2826
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01779.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY826.2e-26159217259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D ++WrKYGqK++kgs++pr+YY+C+s   C+++k vers   p v+++tY  eH h 
  Pahal.C01779.1 159 TDLWAWRKYGQKPIKGSPYPRGYYKCSSLkACMARKLVERSPAKPGVLVVTYIAEHCHA 217
                     699************************9989*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.311153219IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.5E-26153219IPR003657WRKY domain
SuperFamilySSF1182904.05E-23156219IPR003657WRKY domain
SMARTSM007749.0E-31158218IPR003657WRKY domain
PfamPF031063.5E-21160216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MECSTNDWDL QAVVRSCGTA ACGSDGSSEA APPPPRPEEA RSGIISNVVG RAAAAPEFLV  60
GRPVRPAAAL RELDYLGLDH ELPRAPFSIT PSSERGAALD HEVLISFPAA STSGQQLMQP  120
RKQPGRKPSV RTPRPKRSKK SQMKKVVCEV PVADGGVSTD LWAWRKYGQK PIKGSPYPRG  180
YYKCSSLKAC MARKLVERSP AKPGVLVVTY IAEHCHAVPT MLNALAGTTR HRPASPDGGC  240
QASHGASDEA CGRREEDSAD ASSTAADGGG AETADDENEP PWQLVDMAMD EYPLDDFLAP  300
FDDDFDRLLE DDDGVLERRV SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-17140220280Disease resistance protein RRS1
5w3x_D2e-17140220280Disease resistance protein RRS1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114161e-88AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706011e-88AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809273.10.0WRKY transcription factor 22-like
TrEMBLA0A2S3H9910.0A0A2S3H991_9POAL; Uncharacterized protein
STRINGPavir.J36501.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-37WRKY family protein