PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01782.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 337aa    MW: 35930.8 Da    PI: 6.8393
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01782.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.21.4e-32190247259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s +prsYYrCt a+C vkk+vers++dp++v++tYeg+H+h+
  Pahal.C01782.1 190 EDGYRWRKYGQKAVKNSSYPRSYYRCTAARCGVKKRVERSHQDPSTVITTYEGQHTHP 247
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-34174249IPR003657WRKY domain
SuperFamilySSF1182908.11E-29181249IPR003657WRKY domain
PROSITE profilePS5081130.549184249IPR003657WRKY domain
SMARTSM007748.2E-37189248IPR003657WRKY domain
PfamPF031063.0E-26190247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSAGAGAGGH AGGLYGDPAA ADHFAAFDHD DFFQRSPCAG EGGGGDGLMT PYSSITDYLQ  60
GSLDPAGLAA HLDAPCRSGD DAVKQGMEAV PVRLVRHDGQ TGAPVTPNSS VLSSSSCEAG  120
GADEEPRRRR KAGRPEEEEE EEQEEIDADE GSAADRNCKQ RGKEKKARGE KKPREPRVAF  180
MTKSEVDHLE DGYRWRKYGQ KAVKNSSYPR SYYRCTAARC GVKKRVERSH QDPSTVITTY  240
EGQHTHPSPA SLLIRGGGGA YAAPARLGFR PDLRAMIDYA HATRVTPGSL LLPPAAGGLL  300
PPTPRLLQEH RRSSSHLAAY GSVLDLIPSE MGSEHA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-26180250878Probable WRKY transcription factor 4
2lex_A3e-26180250878Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586071e-155KU058607.1 UNVERIFIED: Panicum miliaceum WRKY7-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805394.10.0WRKY transcription factor 28-like
TrEMBLA0A2S3H9770.0A0A2S3H977_9POAL; Uncharacterized protein
STRINGPavir.J37620.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.13e-41WRKY DNA-binding protein 71