PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01852.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 495aa    MW: 52288.1 Da    PI: 5.1591
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01852.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.72.3e-107794531373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     lv+lL++cA a++sgd ++a+  La+ + + s     + + R+a +f+ ALa+rl+   ++ +   pp + +    +  +  ++ f+++ P+l+f
  Pahal.C01852.1  79 LVHLLVTCAGAIQSGDYSAAHGNLAEARAILSVITtsTGIGRVANHFADALAQRLFPAYPQAA---PPAPPP----AALADLYSHFYDAGPYLNF 166
                     68***************************955444247899***************9444333...444433....556667888********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++ taNqaIl+a+eg++rvH++Df ++qGlQWp+L++aL++R++gpp+lRiTg+g++ +g  +el+e+g rLa+fA++lgvpf f+ + +++l+ 
  Pahal.C01852.1 167 AYSTANQAILDAFEGCDRVHVVDFALMQGLQWPTLIHALSQREGGPPRLRITGIGPQPTGAGDELREVGVRLAEFARSLGVPFYFQGVCVDQLDG 261
                     ********************************************************8888*********************************** PP

            GRAS 189 leleeLrvkp..gEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                     l+ ++L++ p  gEala n++lqlhrll ++ + +    ++d +L+lv +l+P+v++vveqeadhn++++lerf++al +y+a+fds++a  +r 
  Pahal.C01852.1 262 LSNWMLKIVPgdGEALAFNSILQLHRLLVDPDADPAvpaPIDILLDLVTELQPRVFTVVEQEADHNRPPLLERFTNALFHYAAMFDSMAAVGHR- 355
                     **********99***************96655544444499***********************************************888455. PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl.llrkvk..sdgyrveeesgslvlgWkdrpLvsv 370
                       +  ++ +++l+ ei ++v+ eg++r erhe l++Wrerl +aG+++vp++ ++++ a + llr ++  + gy++ e  gsl l W+drpL+++
  Pahal.C01852.1 356 GGATDSLAEAYLRAEIFDIVCGEGSARAERHEPLGRWRERLARAGLTQVPFGRNEVQLATAqLLRATSspGSGYSILECAGSLALAWHDRPLYAA 450
                     55555666666*****************************************998875543155554436788********************** PP

            GRAS 371 SaW 373
                     +aW
  Pahal.C01852.1 451 TAW 453
                     *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.67953431IPR005202Transcription factor GRAS
PfamPF035148.0E-10579453IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MGLIPFGLLP MDPGTAATLT GAISPPFPAG AAANSAAYCI DPALFASLLP PGRQPAAPAA  60
AEETRRRQEE EEEGAAIRLV HLLVTCAGAI QSGDYSAAHG NLAEARAILS VITTSTGIGR  120
VANHFADALA QRLFPAYPQA APPAPPPAAL ADLYSHFYDA GPYLNFAYST ANQAILDAFE  180
GCDRVHVVDF ALMQGLQWPT LIHALSQREG GPPRLRITGI GPQPTGAGDE LREVGVRLAE  240
FARSLGVPFY FQGVCVDQLD GLSNWMLKIV PGDGEALAFN SILQLHRLLV DPDADPAVPA  300
PIDILLDLVT ELQPRVFTVV EQEADHNRPP LLERFTNALF HYAAMFDSMA AVGHRGGATD  360
SLAEAYLRAE IFDIVCGEGS ARAERHEPLG RWRERLARAG LTQVPFGRNE VQLATAQLLR  420
ATSSPGSGYS ILECAGSLAL AWHDRPLYAA TAWSAAGGSA AGAVAGTEGR DNNGRRKTRN  480
GSREINSTGN LAIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-47624544379Protein SCARECROW
5b3h_A1e-47624543378Protein SCARECROW
5b3h_D1e-47624543378Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806638.10.0DELLA protein DWARF8-like
TrEMBLA0A2S3H9Q80.0A0A2S3H9Q8_9POAL; Uncharacterized protein
STRINGPavir.Ca00986.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.13e-85GRAS family protein