PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01870.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YB
Protein Properties Length: 194aa    MW: 21798.4 Da    PI: 7.1482
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01870.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB167.81.3e-5218110294
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                     +eqdr+lPian++rim++++P+n+ki+kdake+vqecvsefisf+tseasdkc +ekrktingddl+w+++tlGfe+yveplk ylk yre+ 
  Pahal.C01870.1  18 KEQDRYLPIANIGRIMRRAVPENGKIAKDAKESVQECVSEFISFITSEASDKCMKEKRKTINGDDLIWSMGTLGFEEYVEPLKHYLKLYREVL 110
                     89*****************************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-4716109IPR009072Histone-fold
SuperFamilySSF471134.81E-3620110IPR009072Histone-fold
PfamPF008083.6E-262387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.5E-195169No hitNo description
PROSITE patternPS0068505470IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.5E-197088No hitNo description
PRINTSPR006154.5E-1989107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSEAEGAPET GGGSYGGKEQ DRYLPIANIG RIMRRAVPEN GKIAKDAKES VQECVSEFIS  60
FITSEASDKC MKEKRKTING DDLIWSMGTL GFEEYVEPLK HYLKLYREVL IESPPLSLRA  120
VYHCIRYEWN CCPVMGADMQ YRSNLPRCLS GLFTIVFVMG GIATLLWVQI VIREFLIARK  180
GNVDVCWKLL VSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A3e-4418108393NF-YB
4awl_B3e-4418108494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4418108494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0787421e-108KM078742.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805143.13e-74nuclear transcription factor Y subunit B-4-like
RefseqXP_025805144.13e-74nuclear transcription factor Y subunit B-4-like
TrEMBLA0A2T8KIH71e-141A0A2T8KIH7_9POAL; Uncharacterized protein
TrEMBLA0A2T8KIM21e-141A0A2T8KIM2_9POAL; Uncharacterized protein
STRINGPavir.J18451.1.p1e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.65e-55nuclear factor Y, subunit B1