PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01885.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 250aa    MW: 27040.9 Da    PI: 8.2194
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01885.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY38.91.7e-12931352059
                     S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  20 fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       r+Y+rCt++   gC+++k+v+r++ dp + +++Y+g H + 
  Pahal.C01885.2  93 LCRAYFRCTHRnsqGCSATKHVQRADGDPLLYDVVYHGAHACA 135
                     57********98889*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-1269136IPR003657WRKY domain
SMARTSM007741.2E-1187136IPR003657WRKY domain
SuperFamilySSF1182902.62E-1192135IPR003657WRKY domain
PfamPF031066.6E-1294134IPR003657WRKY domain
PROSITE profilePS5081111.42895132IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MPSPRGGRGR RASGRRCGWP RCRTWRPWTT GSAGASTGRR TSSAPCTPGQ PHTSQPPRHS  60
HLAARNDYYG QSRVDGVERA TLTRVGPAIG FALCRAYFRC THRNSQGCSA TKHVQRADGD  120
PLLYDVVYHG AHACAQAAHP GAEHLRRQLQ PEGHADAEQS SPLAPEAECL QAGLEPVAPY  180
SFAPAPGAGA DFVGYFPLLS PTGLEWQLRS SYAAGGLGVG MDYEPHFEEF YKNATDPFQW  240
EYSDLYAAN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586191e-101KU058619.1 UNVERIFIED: Panicum miliaceum WRKY1-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806380.11e-110probable WRKY transcription factor 30
TrEMBLA0A2S3H9G20.0A0A2S3H9G2_9POAL; Uncharacterized protein
STRINGPavir.J03334.1.p1e-95(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.26e-10WRKY family protein