PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01897.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 354aa    MW: 37702 Da    PI: 7.8116
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01897.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.51.2e-22214276163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elkre+rkq+NRe+ArrsR+RK+ae+eeL++ v++L+aeN++L++e+ +l++ ++kl+ e+
  Pahal.C01897.2 214 ERELKREKRKQSNRESARRSRLRKQAETEELATQVESLTAENTSLRSEIGRLTESSEKLRLEN 276
                     89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.2E-28192IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.1E-18209273No hitNo description
SMARTSM003386.9E-23214278IPR004827Basic-leucine zipper domain
PfamPF001705.1E-21214276IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.231216279IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.56E-11217272No hitNo description
CDDcd147025.17E-22219267No hitNo description
PROSITE patternPS000360221236IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAHDEAVATQ KTGNTTSSPK DQPAPSPYPD WSTMQAYYGP GVLPPTYFAP AIAPGHPPPY  60
MWGPQPLMPH PFGTPYAAMY PHGAAYPHPL VPMVSNPLSV EPTKSANSKE KSSNKKLKEI  120
DQTAVCAGSG NSKRTMSSSE DYSAEGSSDV NDQKVNKTSR KRSSVDGPGA ETSAAARIED  180
VANSRAMGAT ISPSPGVIVP PHTGGPTDLS IKDERELKRE KRKQSNRESA RRSRLRKQAE  240
TEELATQVES LTAENTSLRS EIGRLTESSE KLRLENSALM VKLKDPELPA PAEPSPNKAA  300
ASSTSPRPAA ENFLSMIDST ASAPGVSRHT EHGEPKLRQL LDSNPSTDVA AVS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230236RRSRLRK
2230237RRSRLRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807252.10.0common plant regulatory factor 1-like isoform X2
TrEMBLA0A2T7EA700.0A0A2T7EA70_9POAL; Uncharacterized protein
STRINGPavir.J01411.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.15e-48G-box binding factor 3