PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01915.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 230aa    MW: 23693.4 Da    PI: 7.9032
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01915.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.3e-20107141135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Pahal.C01915.1 107 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 141
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.2E-20101153IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.483101137IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-13102142No hitNo description
Gene3DG3DSA:3.30.50.102.5E-17105141IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.29E-13106138No hitNo description
PfamPF003205.0E-18107141IPR000679Zinc finger, GATA-type
PROSITE patternPS003440107132IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MLQELAPCAC GGFYGAGGCG GRCTGAAASA FSMLFPAGAE QCYYYKEEEE DGSPYGGGPV  60
DCTLSLGTPS TRRAEAGAGA HARAAAGGGG AAPCKESSGR GSPARRCANC DTTSTPLWRN  120
GPRGPKSLCN ACGIRYKKEE RRAAAAVAPA PQEYACGGYA RQQHQQQQPP QPQWGCYGAA  180
AAKSASFGMY GGDVVDAAAD GPCLSWMLNV MPSSPAFTVR ERPTLFQYY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806644.11e-114GATA transcription factor 15-like
TrEMBLA0A2S3H9W01e-162A0A2S3H9W0_9POAL; Uncharacterized protein
STRINGPavir.J26908.1.p5e-94(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.11e-25GATA transcription factor 19