PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01924.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 585aa    MW: 61131.3 Da    PI: 6.7622
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01924.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.5e-31336394259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++vv++tYeg+Hnh+
  Pahal.C01924.1 336 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDTTVVITTYEGNHNHP 394
                     7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-34320396IPR003657WRKY domain
SuperFamilySSF1182905.89E-28328396IPR003657WRKY domain
PROSITE profilePS5081130.63330396IPR003657WRKY domain
SMARTSM007741.4E-37335395IPR003657WRKY domain
PfamPF031061.5E-26337394IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MMESSYLGKR KLNANGAERE PSGAPAGFQA VVLGYDDDAG EAGAEARRVV GEMDFFKTEK  60
RKEEAADRSH SAAGAPDDLS INKDDLTINM GLHVGRRKSG SEESIVDDGV SSNEVDHRET  120
KAELALAKSE IGRLNEENKQ LKNMLTRVTT NYNSLQMHVL TLMQHRNSHR GLGAPGHELS  180
VDPEKDQDGS QLLPRQFISL GTAASPDEPP LRSAGADIRG CDCSASPSNT DAAMPPPVDY  240
CAGKGNAATI SSKDVMPLPT FDHHHHHHHH RGGAHERDQR GSSPEDPPPH HVPQGWLPSK  300
VPKFLPAKGP EPVPEAATMR KARVSVRARS EAAMISDGCQ WRKYGQKMAK GNPCPRAYYR  360
CTMAAGCPVR KQVQRCAEDT TVVITTYEGN HNHPLPPAAM PMASTTAAAA SMLLSGSMPS  420
ADGSLMAGSN FLARAVLPCS SNVATISASA PFPTVTLDLT QPGPGAPQPP PRPDPAQLQA  480
ALADAARPVA LPQLFGQKLY DPSKLSAVQA AAKAAPADAG DTVSAAAVIA SDPNFPAVLA  540
AAIKSYIGGS SSGGGGGSSG TVPPPPASSG GDSSRDDKIG EQDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-22326396877Probable WRKY transcription factor 4
2lex_A2e-22326396877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-160CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807048.10.0WRKY transcription factor 42-like isoform X1
TrEMBLA0A2S3H9N50.0A0A2S3H9N5_9POAL; Uncharacterized protein
STRINGPavir.Ca00949.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.15e-83WRKY family protein