PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01924.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 496aa    MW: 51630.9 Da    PI: 7.468
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01924.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.6e-31247305259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++vv++tYeg+Hnh+
  Pahal.C01924.2 247 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDTTVVITTYEGNHNHP 305
                     7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-34231307IPR003657WRKY domain
SuperFamilySSF1182904.71E-28239307IPR003657WRKY domain
PROSITE profilePS5081130.63241307IPR003657WRKY domain
SMARTSM007741.4E-37246306IPR003657WRKY domain
PfamPF031061.2E-26248305IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MGLHVGRRKS GSEESIVDDG VSSNEVDHRE TKAELALAKS EIGRLNEENK QLKNMLTRVT  60
TNYNSLQMHV LTLMQHRNSH RGLGAPGHEL SVDPEKDQDG SQLLPRQFIS LGTAASPDEP  120
PLRSAGADIR GCDCSASPSN TDAAMPPPVD YCAGKGNAAT ISSKDVMPLP TFDHHHHHHH  180
HRGGAHERDQ RGSSPEDPPP HHVPQGWLPS KVPKFLPAKG PEPVPEAATM RKARVSVRAR  240
SEAAMISDGC QWRKYGQKMA KGNPCPRAYY RCTMAAGCPV RKQVQRCAED TTVVITTYEG  300
NHNHPLPPAA MPMASTTAAA ASMLLSGSMP SADGSLMAGS NFLARAVLPC SSNVATISAS  360
APFPTVTLDL TQPGPGAPQP PPRPDPAQLQ AALADAARPV ALPQLFGQKL YDPSKLSAVQ  420
AAAKAAPADA GDTVSAAAVI ASDPNFPAVL AAAIKSYIGG SSSGGGGGSS GTVPPPPASS  480
GGDSSRDDKI GEQDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-22237307877Probable WRKY transcription factor 4
2lex_A1e-22237307877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-160CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807048.10.0WRKY transcription factor 42-like isoform X1
TrEMBLA0A2S3H9N50.0A0A2S3H9N5_9POAL; Uncharacterized protein
STRINGPavir.Ca00949.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.18e-81WRKY family protein