PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01935.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 409aa    MW: 43133.7 Da    PI: 7.0072
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01935.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.61.2e-33188245259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d  vv++tYeg+H+h+
  Pahal.C01935.1 188 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSFQDAAVVITTYEGKHTHP 245
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-35172247IPR003657WRKY domain
SuperFamilySSF1182903.53E-29179247IPR003657WRKY domain
PROSITE profilePS5081131.904182247IPR003657WRKY domain
SMARTSM007744.3E-40187246IPR003657WRKY domain
PfamPF031061.7E-26188245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MSGARHDHAG GHHQHHLSGD FQFHDELASL FAQRPDAPTP MMQQPWFTDY LHASAPTPLD  60
YDAFAGDDFD VPAVDEDVKR ELVVDTTGAA AGSGGGTTTA PLTPNSMSMS STSSEACGAG  120
AGAGDESAGK CKKEEGEESK DGSAAAKGDG EGEEKNKKGA AKGKGKGEKR PRQPRFAFMT  180
KSEVDHLEDG YRWRKYGQKA VKNSPFPRSY YRCTTQKCPV KKRVERSFQD AAVVITTYEG  240
KHTHPIPATL RGSSHLLAAH HHADLHHPHF RMPPPPTVAL GVGAGGGHAF RPGGGSAFDA  300
LGLLQPQQLQ QGHHHAAQQL VVSGAGAAAV SGLQQANAAM SSHALPDHQH GLAAIVGTAG  360
TTIATATTAA ASAPLRMQHF MAQDYAGLLQ DMFPSFVHNN DDGDNHHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26178248878Probable WRKY transcription factor 4
2lex_A1e-26178248878Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807851.10.0uncharacterized protein LOC112886239
TrEMBLA0A2S3H9K90.0A0A2S3H9K9_9POAL; Uncharacterized protein
STRINGPavir.J12030.1.p0.0(Panicum virgatum)
STRINGSi022220m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.15e-48WRKY DNA-binding protein 71