PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02228.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 217aa    MW: 23225.2 Da    PI: 9.6555
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02228.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.71e-32129187159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+
  Pahal.C02228.1 129 LDDGYRWRKYGQKAVKNSAYPRSYYRCTHHTCNVKKQVQRLARDTSIVVTTYEGVHNHP 187
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-33115187IPR003657WRKY domain
SuperFamilySSF1182909.68E-29121188IPR003657WRKY domain
PROSITE profilePS5081128.977124189IPR003657WRKY domain
SMARTSM007743.6E-38129188IPR003657WRKY domain
PfamPF031068.8E-26130187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEDSQRGGSQ QPNPQLPGFL ASPVAAAPQL VPQACTSGTG GALSCPPAAL DWASLLLPRA  60
PGSLHDVRAT TSQEQAMAGA SGCSSSTAGD GDGETEAGKK GGGTRGNKKK KKPSRPRFAF  120
QTRSENDILD DGYRWRKYGQ KAVKNSAYPR SYYRCTHHTC NVKKQVQRLA RDTSIVVTTY  180
EGVHNHPCEK LMEALSPILK QLQLLSQLQC STNQLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-26119186774Probable WRKY transcription factor 4
2lex_A9e-26119186774Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9580741e-129EU958074.1 Zea mays clone 1671428 WRKY23 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806667.11e-161probable WRKY transcription factor 48
TrEMBLA0A2S3HAK71e-159A0A2S3HAK7_9POAL; Uncharacterized protein
STRINGPavir.Ca01507.1.p2e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.11e-46WRKY DNA-binding protein 24