PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C02291.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HB-PHD

Protein Properties

Length: 721aa MW: 79221.1 Da PI: 4.4959

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C02291.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.8	2.4e-10	567	606	13	52
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + L e+F+ ++yps++ +e LA++lgLt +qV+ WF rR Pahal.C02291.1 567 QKLHEHFKTDPYPSRSLKESLAEELGLTFQQVSRWFESRR 606 6799**********************************99 PP
2	PHD	44.7	3e-15	211	266	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ + +++++lCdg C++ fH++Cl+++l++e++peg wlC+ C++k Pahal.C02291.1 211 FCATCGSkdVTLGNDIILCDGaCDRGFHQNCLNPPLRTEDIPEGdeGWLCPACDCK 266 7****64445****66*******************9*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	1.42E-13	201	269	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	3.8E-13	208	265	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	11.208	209	266	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	4.1E-11	211	264	IPR001965	Zinc finger, PHD-type
CDD	cd15504	4.80E-26	211	263	No hit	No description
Pfam	PF00628	1.9E-12	211	266	IPR019787	Zinc finger, PHD-finger
PROSITE pattern	PS01359	0	212	263	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	4.0E-11	548	606	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.52E-10	550	610	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.588	552	612	IPR001356	Homeobox domain
SMART	SM00389	9.4E-10	554	616	IPR001356	Homeobox domain
CDD	cd00086	1.42E-10	561	606	No hit	No description
Pfam	PF00046	8.4E-8	567	606	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MDKNTPCPVE GNGEIKNGVS SSQNPEAVEH QVMYTSQTVQ NTMGIRKNYK RAANRGKKGS 60 QGLTGQTYTL RSSGNNVRML RSTSSSKTTP TEHAQTPVQP AAKRRKRGRP SKSNKSSTDE 120 FSQIRKRVRY ILNRMNYEQS LIEAYASEGW KNQSLDKIRP EKELERAKAE ILRCKLRIRE 180 VFQNLDSLLS KGKIDESLFD SEGEISCEDI FCATCGSKDV TLGNDIILCD GACDRGFHQN 240 CLNPPLRTED IPEGDEGWLC PACDCKIDCI DIINELQGSD LSIDDSWEKV FPEAAALANG 300 SKQDDAFDLP SDDSDDNDFD PNMSEEHVAS KEEGSSEEEE EEDGGSDSDD SNFLTSSNSD 360 GSGPLTTDKK KVDDLGLPSE DSEDDDYDPA GPDSDNDSDK DIQKNKSTSD ESDFTSDSDD 420 FCEEIAKSGG HDEVSSPPLP DVKVDDMERS TPQANTENSN DDPMETEMDQ SVVLPVSGRR 480 QTDRLDYKKL YDEAYGEAPS DSSDDEEWSG KSTPTKGNEE SEADSPAVKS LHPDSLQGSV 540 DEKHGDLTSN GSNSATRKGH FGPVINQKLH EHFKTDPYPS RSLKESLAEE LGLTFQQVSR 600 WFESRRHFTK AASSRKGICP DNHSPENTNS PVAASKQLDE PEETETEKPS VCKNKNATIF 660 GKVGSPKVGS RKNRCKSASG GDVSGSKVDS AEDQVPGLDL ADKARQKAIQ REMMKKKKGR 720 *

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MDKNTPCPVE GNGEIKNGVS SSQNPEAVEH QVMYTSQTVQ NTMGIRKNYK RAANRGKKGS  60
QGLTGQTYTL RSSGNNVRML RSTSSSKTTP TEHAQTPVQP AAKRRKRGRP SKSNKSSTDE  120
FSQIRKRVRY ILNRMNYEQS LIEAYASEGW KNQSLDKIRP EKELERAKAE ILRCKLRIRE  180
VFQNLDSLLS KGKIDESLFD SEGEISCEDI FCATCGSKDV TLGNDIILCD GACDRGFHQN  240
CLNPPLRTED IPEGDEGWLC PACDCKIDCI DIINELQGSD LSIDDSWEKV FPEAAALANG  300
SKQDDAFDLP SDDSDDNDFD PNMSEEHVAS KEEGSSEEEE EEDGGSDSDD SNFLTSSNSD  360
GSGPLTTDKK KVDDLGLPSE DSEDDDYDPA GPDSDNDSDK DIQKNKSTSD ESDFTSDSDD  420
FCEEIAKSGG HDEVSSPPLP DVKVDDMERS TPQANTENSN DDPMETEMDQ SVVLPVSGRR  480
QTDRLDYKKL YDEAYGEAPS DSSDDEEWSG KSTPTKGNEE SEADSPAVKS LHPDSLQGSV  540
DEKHGDLTSN GSNSATRKGH FGPVINQKLH EHFKTDPYPS RSLKESLAEE LGLTFQQVSR  600
WFESRRHFTK AASSRKGICP DNHSPENTNS PVAASKQLDE PEETETEKPS VCKNKNATIF  660
GKVGSPKVGS RKNRCKSASG GDVSGSKVDS AEDQVPGLDL ADKARQKAIQ REMMKKKKGR  720
*

Functional Description ? help Back to Top
Source	Description
UniProt	Interacts with the shrunken (SHR) 26 bp feedback control element.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807084.1	0.0	homeobox protein HOX1A-like isoform X1
Refseq	XP_025807085.1	0.0	homeobox protein HOX1A-like isoform X1
Swissprot	P46605	0.0	HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBL	A0A2S3HAD8	0.0	A0A2S3HAD8_9POAL; Uncharacterized protein
STRING	Pavir.Ca01677.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-80	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Link Out ? help Back to Top
Phytozome	Pahal.C02291.1

Publications ? help Back to Top
Bellmann R,Werr W Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element. EMBO J., 1992. 11(9): p. 3367-74 [PMID:1354614]