PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02446.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 420aa    MW: 44700.6 Da    PI: 6.0584
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02446.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS268.62e-82334162373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfs 94 
                     ++lLl+cA a++s+d +laq++++ l+++as++gdp+qRl++ +++AL ar  r +    ++    ++++   ++++++++l  +++++P+++f+
  Pahal.C02446.1  33 QQLLLHCAAALESNDVTLAQQAMWVLNNIASSQGDPNQRLTSWLLRALVARACRLCGPAGAT----QAAPAPRERAMSVTELaeYVDLTPWHRFG 123
                     699***************************************************44333333....2222223333444444449********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl..... 181
                     + + N aIl+av+g+ +vH++D++++ ++QWp+L++ +++Rp+gpp lRiT+ ++  ++        ee+g rLa+fA++ gv++efnv+     
  Pahal.C02446.1 124 FTASNGAILRAVAGSAAVHVVDLSVTRCMQWPTLIDMMSKRPGGPPALRITVPSARPAVpplLGVPDEELGVRLANFAKSKGVQLEFNVVskgps 218
                     ***************************************************99996666877777789**************************9 PP

            GRAS 182 ............vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                                 ++++l+++  ++ +L+++ gEal+Vn++  + ++       +  rd++L++v+ l+P +v+v++++ad++s+s++ r+  +++
  Pahal.C02446.1 219 tsptsstknkatLCQDLASVlsDPPSLALRDGEALVVNCQSWIRHVA------PGSRDAFLDAVRALNPCLVTVTDEDADLDSPSLASRIEGCFN 307
                     999987766555444444447789999**************999997......555788************************************ PP

            GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                     +++ lfd+l++++pr+s  r+  E++ +gr+i++vv +  a+  er e+ ++  er+++ GF  v+++e+aa ++++ll++++  g+ v+ e++ 
  Pahal.C02446.1 308 FHWILFDALDTSAPRDSPRRVEHEAA-VGRKIESVVGADDADGAERSESGARLAERMQRNGFAGVAFDEEAAGEVRRLLSEHA-TGWGVKREEDM 400
                     ***********************999.********************************************************.99********* PP

            GRAS 358 lvlgWkdrpLvsvSaW 373
                     lvl+Wk++  v + aW
  Pahal.C02446.1 401 LVLTWKGHGAVYTGAW 416
                     ***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.3666398IPR005202Transcription factor GRAS
PfamPF035146.9E-8033416IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MEQELRTGGG GGGLRAHSSV CFSCALIDGP RIQQLLLHCA AALESNDVTL AQQAMWVLNN  60
IASSQGDPNQ RLTSWLLRAL VARACRLCGP AGATQAAPAP RERAMSVTEL AEYVDLTPWH  120
RFGFTASNGA ILRAVAGSAA VHVVDLSVTR CMQWPTLIDM MSKRPGGPPA LRITVPSARP  180
AVPPLLGVPD EELGVRLANF AKSKGVQLEF NVVSKGPSTS PTSSTKNKAT LCQDLASVLS  240
DPPSLALRDG EALVVNCQSW IRHVAPGSRD AFLDAVRALN PCLVTVTDED ADLDSPSLAS  300
RIEGCFNFHW ILFDALDTSA PRDSPRRVEH EAAVGRKIES VVGADDADGA ERSESGARLA  360
ERMQRNGFAG VAFDEEAAGE VRRLLSEHAT GWGVKREEDM LVLTWKGHGA VYTGAWAPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-523541990475Protein SHORT-ROOT
5b3h_B3e-523541936421Protein SHORT-ROOT
5b3h_E3e-523541936421Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806480.10.0scarecrow-like protein 32
TrEMBLA0A2S3HAR10.0A0A2S3HAR1_9POAL; Uncharacterized protein
STRINGSi022117m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122273238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-101GRAS family protein