PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02475.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 231aa    MW: 23631.5 Da    PI: 8.6459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02475.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.35.9e-212778156
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    ++++GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa+++++g+
  Pahal.C02475.1 27 PHFRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAAREYRGA 78
                    689*******.**********83...36**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-142777IPR001471AP2/ERF domain
CDDcd000183.20E-182786No hitNo description
Gene3DG3DSA:3.30.730.104.4E-322885IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-232886IPR016177DNA-binding domain
PROSITE profilePS5103223.8682885IPR001471AP2/ERF domain
SMARTSM003801.7E-362891IPR001471AP2/ERF domain
PRINTSPR003674.6E-112940IPR001471AP2/ERF domain
PRINTSPR003674.6E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAPRTSEKTM APAAAPGLAL GVAGGGPHFR GVRKRPWGRY AAEIRDPAKK SRVWLGTFDT  60
AEEAARAYDA AAREYRGAKA KTNFPYPSSS MPPAATGGSR SGDSSTVESF GGDVQAPMQA  120
MPLPPSLELD LFHRAAAAGA GAGAGVRFPF SSYPVTHPYY YFGQAAAAAA GCHMQFKLPA  180
TVTVAAVAQS DSDSSSVVDL SPPPAAAVSA KKASAFDLDL NCPPPAEAEA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-222690368ATERF1
3gcc_A3e-222690368ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807617.11e-163ethylene-responsive transcription factor 8-like
TrEMBLA0A2S3HAW21e-162A0A2S3HAW2_9POAL; Uncharacterized protein
TrEMBLA0A2T7EC141e-162A0A2T7EC14_9POAL; Uncharacterized protein
STRINGPavir.J14354.1.p2e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-21erf domain protein 9