PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02477.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 196aa    MW: 20620.4 Da    PI: 10.1063
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02477.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-184493255
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +gr++AeIrd +     r +r++lg+++++ eAa a+++a+ +l+g
  Pahal.C02477.1 44 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDSPVEAAMAYDRAAVALRG 93
                    6********.**********88.....45************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.24E-2743100No hitNo description
PROSITE profilePS5103221.56244101IPR001471AP2/ERF domain
PfamPF008475.1E-124493IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-2144101IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-2944100IPR001471AP2/ERF domain
SMARTSM003801.7E-3144107IPR001471AP2/ERF domain
PRINTSPR003673.5E-94556IPR001471AP2/ERF domain
PRINTSPR003673.5E-96783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MQMEWDMRGG VGVGDGGGAR AGGLAVGGVV VGGGDQHQQR VEAHYRGVRK RPWGRYAAEI  60
RDPWRKTRVW LGTYDSPVEA AMAYDRAAVA LRGSKARLNF GGGCGRAREN APVNLPRVPL  120
QARCQLLGGG LDMGRPSPWH VACFPPSMLH QAAAPQAGGL LAADYAASQP STALELRTGP  180
RALPFDLNEP PSNGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2044100562ATERF1
3gcc_A6e-2044100562ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0404203e-73BT040420.1 Zea mays full-length cDNA clone ZM_BFc0090F19 mRNA, complete cds.
GenBankEU9735033e-73EU973503.1 Zea mays clone 399837 mRNA sequence.
GenBankKJ7269423e-73KJ726942.1 Zea mays clone pUT3488 AP2-EREBP transcription factor (EREB93) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809088.11e-138ethylene-responsive transcription factor RAP2-1-like
TrEMBLA0A2S3HAU01e-137A0A2S3HAU0_9POAL; Uncharacterized protein
STRINGPavir.J36215.1.p4e-80(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-29ERF domain protein 12