PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C02498.3

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YC

Protein Properties

Length: 329aa MW: 35261.3 Da PI: 5.3343

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C02498.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	55.6	1.2e-17	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ s ++++++ +++dfl ++v + Pahal.C02498.3 6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGVKTVGSSHLKQCIQAYNVYDFLREVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.2E-23	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	7.05E-19	4	89	IPR009072	Histone-fold
Pfam	PF00808	2.0E-16	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YDITIRKGVK 60 TVGSSHLKQC IQAYNVYDFL REVVSKVPDT STSDAIVDDK LGKRRKSEED GSEEELKRTR 120 NDAERHTSNG RGCRRGRGRG RRGGRGAWRE AVTTHEQFVE NQSSKPAGLK VEIADEISDV 180 TEAKEATPVS SARACLRNID LNLDPVDEDD DGVTVPPQAQ SSAPATNSAA ANLGLTAPAT 240 SSAAANLGLT APATSSAAAN LGLTAPATSS AAATAGPSVP RLKEGAKLKE FLGGWELPDM 300 NKMDMDPAQF ALSSNHKLDD DEDYDNEN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-21	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807207.1	0.0	dr1-associated corepressor homolog isoform X3
TrEMBL	A0A2S3HAW0	0.0	A0A2S3HAW0_9POAL; Uncharacterized protein
STRING	Pavir.J02260.1.p	1e-180	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-53	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Pahal.C02498.3