PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C02541.3

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 279aa MW: 29568 Da PI: 6.2921

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C02541.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.4	5.6e-07	254	276	5	27
CHHHCHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkae 27 +r++r++kNRe+A rsR+RK+ + Pahal.C02541.3 254 RRQKRMIKNRESAARSRARKQLS 276 69******************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.0E-6	248	275	No hit	No description
CDD	cd14707	3.85E-13	254	274	No hit	No description
PROSITE pattern	PS00036	0	257	272	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MASQAGGGRG GDAGSAQHGQ VQGLARQGSL YNLTLDEVQN HLGEPLLSMN FDELLKSVLP 60 DSVDPNGTVT GKPDPASNLQ RQGSIMMPPQ LSKKTVDEVW KGIQDGPETS ATDGGRHRRE 120 RQPTLGEMTL EDFLVKAGVV SEGLMKDSDD LPSNINTAGS NVVAGGTSSL NSGAQWLQQY 180 QQQALESQQP SLVGTYMASQ LAPQPLSVAT GAMLDSIYSD GQIISPTVGA FSDPQTPGRK 240 RGASGEVVDK VIERRQKRMI KNRESAARSR ARKQLSIS*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061345	0.0	BT061345.1 Zea mays full-length cDNA clone ZM_BFb0137L05 mRNA, complete cds.
GenBank	EU966389	0.0	EU966389.1 Zea mays clone 294076 bZIP transcription factor mRNA, complete cds.
GenBank	KJ726913	0.0	KJ726913.1 Zea mays clone pUT3458 bZIP transcription factor (bZIP96) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808691.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X3
Swissprot	Q9LES3	5e-58	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A2S3HB00	0.0	A0A2S3HB00_9POAL; Uncharacterized protein
STRING	Pavir.J05672.1.p	1e-165	(Panicum virgatum)
STRING	Pavir.J34085.1.p	1e-165	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-56	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Pahal.C02541.3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]