PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02570.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 279aa    MW: 31376.1 Da    PI: 9.6434
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02570.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.84.8e-19141228196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k++++s+v++  +l lp +f++++   +++++ ++lede+g +++  +   +k+ +  l++GW++F+  ++L++gD++vF+l+++++f  ++ 
  Pahal.C02570.1 141 FVKTMVRSHVSSCFWLGLPTSFCKKNL--PPSEFRMVLEDEDGVEFDAVY--IGKRTG--LSGGWRGFAMHHNLEDGDSLVFELTEHDRF--KIY 227
                     89*********************9995..347789***************..555544..***********************9987888..555 PP

                     E CS
              B3  96 v 96 
                     +
  Pahal.C02570.1 228 I 228
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-24134230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-21135231IPR015300DNA-binding pseudobarrel domain
CDDcd100172.25E-27139230No hitNo description
SMARTSM010194.1E-22141232IPR003340B3 DNA binding domain
PfamPF023626.7E-18141229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52141232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MATKASSAAS GAAYEEQRRK RVLENLKHLE DLGISEMSKS LLQAARLQKQ NKGEVRASPK  60
PRKKFDATEV RRSSRAKATV SYKDDFGELD TFLRHKRRSG GKNADPGREY TGRVSSYEQQ  120
QRAFRRAEKL QDGLDPNNPS FVKTMVRSHV SSCFWLGLPT SFCKKNLPPS EFRMVLEDED  180
GVEFDAVYIG KRTGLSGGWR GFAMHHNLED GDSLVFELTE HDRFKIYIIK AMDEDDVEEA  240
ESDDKNASGG TKEESAQEDS PAAEPPKGAK RRKLRGRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265271PKGAKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809297.10.0B3 domain-containing protein Os05g0481400-like isoform X2
SwissprotQ5KQI41e-133Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A2S3HB280.0A0A2S3HB28_9POAL; Uncharacterized protein
STRINGPavir.J04157.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-46B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]