PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02570.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 257aa    MW: 28961.5 Da    PI: 10.1444
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02570.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-18141225191
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k++++s+v++  +l lp +f++++   +++++ ++lede+g +++  +   +k+ +  l++GW++F+  ++L++gD++vF+l+++++f+
  Pahal.C02570.2 141 FVKTMVRSHVSSCFWLGLPTSFCKKNL--PPSEFRMVLEDEDGVEFDAVY--IGKRTG--LSGGWRGFAMHHNLEDGDSLVFELTEHDRFK 225
                     89*********************9995..347789***************..555544..***********************99877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-19135225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-22135224IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-24139225No hitNo description
PfamPF023621.9E-17141225IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251141232IPR003340B3 DNA binding domain
SMARTSM010191.6E-19141232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MATKASSAAS GAAYEEQRRK RVLENLKHLE DLGISEMSKS LLQAARLQKQ NKGEVRASPK  60
PRKKFDATEV RRSSRAKATV SYKDDFGELD TFLRHKRRSG GKNADPGREY TGRVSSYEQQ  120
QRAFRRAEKL QDGLDPNNPS FVKTMVRSHV SSCFWLGLPT SFCKKNLPPS EFRMVLEDED  180
GVEFDAVYIG KRTGLSGGWR GFAMHHNLED GDSLVFELTE HDRFKNKAKS KVPDMNSREE  240
SMFAEAPPNE SSKHGK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0402170.0BT040217.1 Zea mays full-length cDNA clone ZM_BFc0072G10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809297.11e-160B3 domain-containing protein Os05g0481400-like isoform X2
SwissprotQ5KQI41e-112Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A2S3HB310.0A0A2S3HB31_9POAL; Uncharacterized protein
STRINGPavir.J04157.1.p1e-156(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-43B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]