PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02588.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 283aa    MW: 30915.6 Da    PI: 7.0633
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02588.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.21.7e-18138200259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS..TTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed..pkvveitYegeHnhe 59 
                     +D ++WrKYG K++ ++e+pr YY+C ++   +Cp+kk v+++++   + v+ +t  +eH++e
  Pahal.C02588.1 138 NDRFHWRKYGEKNILNAEHPRLYYKCGYSddhKCPAKKYVQQQSNSspTPVFMVTLINEHTCE 200
                     79*************************998899*******9987542256899999****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-20129200IPR003657WRKY domain
SuperFamilySSF1182907.19E-19132200IPR003657WRKY domain
PROSITE profilePS5081114.86132200IPR003657WRKY domain
SMARTSM007744.2E-27137201IPR003657WRKY domain
PfamPF031068.2E-20138200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSTRLTSATK SQPPRCSSSD RMDAAIQELR RGTRLADLLR EQVELIPELE RRHAAVANVG  60
EISTAMELSL SLLQSEMEHP SSPEVGAVAK AAPAAYSSDG GTGERNGAVA RTRRVRHRRG  120
KHGAELPIKE ILTEAPENDR FHWRKYGEKN ILNAEHPRLY YKCGYSDDHK CPAKKYVQQQ  180
SNSSPTPVFM VTLINEHTCE TLFPDEASSS SSSAASHVLD FTKASLSPPV MAAAPGLKKK  240
AEEDSMSAVS MHSYPYDEYL SSSLPTMSPD GDQVKFSPGP GW*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808777.10.0probable WRKY transcription factor 62
TrEMBLA0A2S3HB390.0A0A2S3HB39_9POAL; Uncharacterized protein
STRINGSi022933m1e-142(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99932944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-14WRKY family protein