PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C02589.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

WRKY

Protein Properties

Length: 186aa MW: 19675.9 Da PI: 5.2672

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C02589.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	41.2	3.4e-13	96	140	17	58
T-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 17 gsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 ++e+pr+Y+rC+++ gC++ ++v++s++dp++ ++ Y geH++ Pahal.C02589.1 96 QQEYPRQYFRCSYKydnGCKAARQVQQSETDPSLYVVAYFGEHTC 140 579********99999***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-12	96	141	IPR003657	WRKY domain
SuperFamily	SSF118290	3.53E-12	96	141	IPR003657	WRKY domain
Pfam	PF03106	7.0E-13	96	140	IPR003657	WRKY domain
SMART	SM00774	6.6E-10	98	142	IPR003657	WRKY domain
PROSITE profile	PS50811	11.99	99	138	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MARGRQTAAA LEALLQGALT DPTVPPHGGL QLKGLTAQIL RCCDRALDSL RGEGVVVDAA 60 GGGWPSRKRR SPPCAEALIR GSPDLDGVRA EGHPEQQEYP RQYFRCSYKY DNGCKAARQV 120 QQSETDPSLY VVAYFGEHTC GKDAAVAALG GADDDNMQKS LVINFGCSSA SSGSPWPSSS 180 FEDDV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	70	SRKRRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809334.1	2e-94	WRKY transcription factor WRKY51-like
TrEMBL	A0A3L6R7E7	6e-54	A0A3L6R7E7_PANMI; Putative WRKY transcription factor 62
STRING	EMT19878	1e-40	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4663	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	2e-14	WRKY DNA-binding protein 70

Link Out ? help Back to Top
Phytozome	Pahal.C02589.1