PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C02590.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

WRKY

Protein Properties

Length: 249aa MW: 26996.5 Da PI: 5.4918

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C02590.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	77.4	1.6e-24	98	157	1	57
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--S CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHn 57 +dDgy+WrKYG K++++ ++pr Y+rC+++ gC ++k+v+r ++dp+++++tY geH+ Pahal.C02590.1 98 MDDGYAWRKYGEKSIQDRKNPRFYFRCAYRdelGCGARKQVDRMEDDPSLFHTTYFGEHT 157 59*************************99999***********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.1E-24	92	158	IPR003657	WRKY domain
PROSITE profile	PS50811	23.215	93	161	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-23	94	160	IPR003657	WRKY domain
SMART	SM00774	1.3E-30	98	162	IPR003657	WRKY domain
Pfam	PF03106	5.3E-23	99	157	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MATADRASAA CGVMAEAREA GVRLLALLQA TGADTGKREL AEQIICCIDR ARAAVRAAGE 60 GKTGQGLGLG ARPPAGSKRR SARRCGEARA RVVASSAMDD GYAWRKYGEK SIQDRKNPRF 120 YFRCAYRDEL GCGARKQVDR MEDDPSLFHT TYFGEHTPAC PRDAAVADLD RDGRRFVVQA 180 SIDSFRACLL AEGEEMPASM VEFTAGYCWP LKDQMANLVS SDVSFATPGE LESLDAISME 240 ELLDLLWP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	1e-18	93	157	3	67	OsWRKY45

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810145.1	1e-172	probable WRKY transcription factor 38
TrEMBL	A0A2S3HB44	1e-179	A0A2S3HB44_9POAL; Uncharacterized protein
STRING	Pavir.J05250.1.p	1e-149	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18697	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46400.1	7e-19	WRKY DNA-binding protein 46

Link Out ? help Back to Top
Phytozome	Pahal.C02590.1