PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02620.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 602aa    MW: 63241.8 Da    PI: 6.5856
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02620.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.11.5e-32253310260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK++kgse+prsYY+C+++gCp+kkkvers  d++v+ei+Y+g+Hnh+k
  Pahal.C02620.1 253 DDGYNWRKYGQKNMKGSENPRSYYKCSFPGCPTKKKVERSP-DGQVTEIVYKGTHNHPK 310
                     8****************************************.***************85 PP
2WRKY1031.7e-32426484159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+ +d+++v++tYeg+Hnh+
  Pahal.C02620.1 426 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERACHDTRAVVTTYEGKHNHD 484
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-29245311IPR003657WRKY domain
PROSITE profilePS5081124.26247311IPR003657WRKY domain
SuperFamilySSF1182903.27E-25248311IPR003657WRKY domain
SMARTSM007741.0E-35252310IPR003657WRKY domain
PfamPF031061.6E-25253309IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-36411486IPR003657WRKY domain
SuperFamilySSF1182904.58E-29418486IPR003657WRKY domain
PROSITE profilePS5081138.159421486IPR003657WRKY domain
SMARTSM007743.2E-37426485IPR003657WRKY domain
PfamPF031069.1E-25427484IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MPRQVGLGIA ILHRLPCLAP LSSPAASSSE PPPRLPPPMT STPGSFGTLA NTGPVALSFA  60
TSSFASFLGA PASGGADSGG LSKFKAMPPP SLPLSHPPAS PSSFLNAFSG FLDSPILLTP  120
SLFPSPTTGA IPSEPFNWMG TSETPQTGVK DEQRQYTDFT FQTAAPVPET TVAGAAQTAS  180
FPQSSSMLMA PLGGLGYSYN GELQQQQPWS YQEPTAQFEA PSATATQPDM LGNGAAPAAV  240
PGFREQSNRP SSDDGYNWRK YGQKNMKGSE NPRSYYKCSF PGCPTKKKVE RSPDGQVTEI  300
VYKGTHNHPK PQSTRRNSSS APAPAVSSYV LQSASDAAAE HSFGALSGTP VATPENSSGS  360
FGDDEINGVS SRLAGNFGAE ELDDDEPDSK KWRKDGGDGE AVSVAGNRTV REPRVVVQTM  420
SDIDVLDDGY RWRKYGQKVV KGNPNPRSYY KCTTAGCPVR KHVERACHDT RAVVTTYEGK  480
HNHDVPPARG SSASLYRAAL AAQQAAGYHQ QGARVAAPTT DGRFGFGAGS GHGAFCGGLL  540
DGGAPTQAAD GGFALSGFGN GSAYSYTSQQ QQQSEAMYYA GPSAKDEPRD DMSFFEQPLL  600
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-35253486877Probable WRKY transcription factor 4
2lex_A4e-35253486877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809961.10.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R41e-156WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2S3HB630.0A0A2S3HB63_9POAL; Uncharacterized protein
STRINGPavir.J03800.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-91WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]