PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02628.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 223aa    MW: 23605.1 Da    PI: 6.1504
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02628.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1861109355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+WvAeIr+p+    + +r++lg+f t+ +Aa a+++a++++ g
  Pahal.C02628.1  61 YRGVRQRP-WGKWVAEIREPN----SgRRHWLGTFSTPVDAALAYDRAAEAFLG 109
                     9*******.**********93....35**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-2160118IPR016177DNA-binding domain
CDDcd000183.59E-2960119No hitNo description
Gene3DG3DSA:3.30.730.102.8E-2960118IPR001471AP2/ERF domain
PROSITE profilePS5103221.19360117IPR001471AP2/ERF domain
SMARTSM003809.8E-3460123IPR001471AP2/ERF domain
PRINTSPR003675.3E-96172IPR001471AP2/ERF domain
PfamPF008474.3E-1261109IPR001471AP2/ERF domain
PRINTSPR003675.3E-98399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGVGPGRKEM GRAAAAPTSR ATGTHQARVN GSANAKPGSG SRRSRSGQRG PGGPDNMRHN  60
YRGVRQRPWG KWVAEIREPN SGRRHWLGTF STPVDAALAY DRAAEAFLGN LAHLNFPADH  120
AAAVTVATAA PAQWQPASCS PAPATTADVF EENEVKPLID VAQGGAGAEV ASQPQQQGAS  180
WLSPEPLLDD DPDDISMYID FDAVDHMMPC YHGIKVEDCQ PD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1860117563ATERF1
3gcc_A6e-1860117563ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809123.11e-163dehydration-responsive element-binding protein 2D-like
TrEMBLA0A2S3HB681e-162A0A2S3HB68_9POAL; Uncharacterized protein
STRINGSi024427m7e-97(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141022226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.23e-17DRE-binding protein 2A