PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02813.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 378aa    MW: 41752.9 Da    PI: 6.2896
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02813.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.26.3e-12120149433
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                      k err+++NReAAr+sR+RKka++++Le+
  Pahal.C02813.1 120 AKTERRLAQNREAARKSRLRKKAYVQQLET 149
                     799*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.9E-6117193IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.174119162IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-8119162No hitNo description
PfamPF001703.3E-9120150IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.44E-7121163No hitNo description
PROSITE patternPS000360124139IPR004827Basic-leucine zipper domain
PfamPF141445.9E-28202276IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MYAAAGNLAA RPLTLEIFPS WPMSHLQQPY SQGNSHSVGS TTDSSSGQNT MPQAELVSPG  60
SMRADSGQQQ EVLMVTVDDY NYEQGLGSAA TTAPIFQQHT ACQDKRKNGS TGKDGKLLDA  120
KTERRLAQNR EAARKSRLRK KAYVQQLETS RIRLQQVEHE LQGARSQGLF PGGGSASGDS  180
SSGAVMFDME YARWLEDDSN LMMELQGIMQ AQNLDANLDA IVEECVRHYD ELFHLRAMLA  240
RSDVFHLMTG LWATTAERCF LWMGGFRPSE ILKMLIPQLD PLTEQQLLGM CNLQRSSEQT  300
EEALVQGLQQ LHQSLADAVG ASPLSDGASI GNYTALMALA LDRLDTLESF YRQVSTYSFF  360
HGHATKKQSN VVQKKHR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805154.10.0transcription factor TGAL5-like isoform X2
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLA0A2S3HBL10.0A0A2S3HBL1_9POAL; Uncharacterized protein
STRINGSi022106m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38093166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.23e-88bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]