PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02813.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 377aa    MW: 41624.8 Da    PI: 6.2896
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02813.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.26.3e-12119148433
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                      k err+++NReAAr+sR+RKka++++Le+
  Pahal.C02813.2 119 AKTERRLAQNREAARKSRLRKKAYVQQLET 148
                     799*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.9E-6116192IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-8118161No hitNo description
PROSITE profilePS502179.174118161IPR004827Basic-leucine zipper domain
PfamPF001703.3E-9119149IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.44E-7120162No hitNo description
PROSITE patternPS000360123138IPR004827Basic-leucine zipper domain
PfamPF141445.9E-28201275IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MYAAAGNLAA RPLTLEIFPS WPMSHLQQPY SGNSHSVGST TDSSSGQNTM PQAELVSPGS  60
MRADSGQQQE VLMVTVDDYN YEQGLGSAAT TAPIFQQHTA CQDKRKNGST GKDGKLLDAK  120
TERRLAQNRE AARKSRLRKK AYVQQLETSR IRLQQVEHEL QGARSQGLFP GGGSASGDSS  180
SGAVMFDMEY ARWLEDDSNL MMELQGIMQA QNLDANLDAI VEECVRHYDE LFHLRAMLAR  240
SDVFHLMTGL WATTAERCFL WMGGFRPSEI LKMLIPQLDP LTEQQLLGMC NLQRSSEQTE  300
EALVQGLQQL HQSLADAVGA SPLSDGASIG NYTALMALAL DRLDTLESFY RQVSTYSFFH  360
GHATKKQSNV VQKKHR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9688470.0EU968847.1 Zea mays clone 324521 transcription factor TGA6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805153.10.0transcription factor TGAL5-like isoform X1
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLA0A2S3HBL10.0A0A2S3HBL1_9POAL; Uncharacterized protein
STRINGSi022106m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.32e-88bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]