PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C02821.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 259aa MW: 28408.6 Da PI: 5.4933

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C02821.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	129.5	2.5e-40	5	136	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 l+pGfrF Pt+eelv++yL++k++g + ++e+vi+ +d+ ++Pw+Lp+ ++++ + w++F++r++++a+g r++r+t sgyWka g+ Pahal.C02821.1 5 LAPGFRFYPTEEELVCFYLRNKLDGVRrGDIERVIPVADVSALDPWQLPEahrgAFSGAVEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGTPG 99 579*******************9886677789**********95455555557789***************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v++++g+ +g+kkt+vfy+grap g kt+W ++ey+ Pahal.C02821.1 100 LVYAADGRPIGTKKTMVFYRGRAPAGAKTKWKLNEYK 136 **********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.27E-43	4	169	IPR003441	NAC domain
PROSITE profile	PS51005	45.793	5	169	IPR003441	NAC domain
Pfam	PF02365	2.8E-22	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MAGDLAPGFR FYPTEEELVC FYLRNKLDGV RRGDIERVIP VADVSALDPW QLPEAHRGAF 60 SGAVEPWFYF CPRQEREARG GRPSRTTPSG YWKAAGTPGL VYAADGRPIG TKKTMVFYRG 120 RAPAGAKTKW KLNEYKALEV EDEDAAGVPA PSHALQTRSE FTLCRLYTQS GCPRQFDRRP 180 SAAAAVGGGS ENPTAAAALA NGEEMGRKRK RAPPSDDDTT SSDGDGSTQQ ILRQRGTDSE 240 GLNDDMAYWS EFLDYDWL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-30	5	169	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-30	5	169	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-30	5	169	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-30	5	169	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-30	5	169	20	168	NAC domain-containing protein 19
3swm_B	2e-30	5	169	20	168	NAC domain-containing protein 19
3swm_C	2e-30	5	169	20	168	NAC domain-containing protein 19
3swm_D	2e-30	5	169	20	168	NAC domain-containing protein 19
3swp_A	2e-30	5	169	20	168	NAC domain-containing protein 19
3swp_B	2e-30	5	169	20	168	NAC domain-containing protein 19
3swp_C	2e-30	5	169	20	168	NAC domain-containing protein 19
3swp_D	2e-30	5	169	20	168	NAC domain-containing protein 19
4dul_A	1e-30	5	169	17	165	NAC domain-containing protein 19
4dul_B	1e-30	5	169	17	165	NAC domain-containing protein 19
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	205	211	GRKRKRA

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP099084	1e-143	FP099084.1 Phyllostachys edulis cDNA clone: bphyem111h11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809342.1	0.0	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-65	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2S3HBL8	0.0	A0A2S3HBL8_9POAL; Uncharacterized protein
STRING	Pavir.J04751.1.p	1e-158	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	6e-68	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Pahal.C02821.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]