PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02822.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 189aa    MW: 20682.9 Da    PI: 9.4111
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02822.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21e-14120164347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++++ +++G g+W+ I+r   k+Rt+ q+ s+ qky
   Pahal.C02822.1 120 PWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKY 164
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00392375IPR001005SANT/Myb domain
SuperFamilySSF466893.73E-112374IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-62573IPR009057Homeodomain-like
CDDcd001673.03E-42673No hitNo description
PROSITE profilePS500907.052673IPR017877Myb-like domain
PROSITE profilePS5129419.637113169IPR017930Myb domain
SuperFamilySSF466892.51E-18115169IPR009057Homeodomain-like
SMARTSM007179.2E-11117167IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.7E-17117168IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.5E-11119163IPR009057Homeodomain-like
PfamPF002491.3E-11120164IPR001005SANT/Myb domain
CDDcd001676.03E-11120165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAFYYGVSGQ SSSAAAAWAA PPSSRPWSKA EDKVFEGALV TFPEHVPNRW TLVASRLPGR  60
TAQEAWDHYQ ALLTDVDLIE RGMVEAPDSW DEDAAAGGGR AGAGRGRGAG GGEERRRGVP  120
WTEEEHRLFL EGLEKYGRGD WRNISRWSVK TRTPTQVASH AQKYFIRQAS AGSRGDSKRK  180
SIHDITTP*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9714051e-171EU971405.1 Zea mays clone 363908 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808699.11e-134transcription factor DIVARICATA-like
SwissprotQ8S9H72e-51DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2S3HBP11e-133A0A2S3HBP1_9POAL; Uncharacterized protein
STRINGSi023363m4e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.17e-42MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]