PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02862.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 262aa    MW: 26940.1 Da    PI: 9.9574
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02862.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.43.1e-13182231554
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                     +r++r++kNRe+A rsR RK+a+++eLe  v +Le+e  +L  e ee ++
  Pahal.C02862.1 182 QRQKRMIKNRESAARSRDRKQAYVAELESQVTQLEEEQAELLTEQEERRQ 231
                     89*************************************99988766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.6E-7178240IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.691180232IPR004827Basic-leucine zipper domain
PfamPF001709.9E-12181230IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-11182232No hitNo description
CDDcd147071.17E-16182228No hitNo description
Gene3DG3DSA:1.20.5.1707.2E-13183238No hitNo description
PROSITE patternPS000360185200IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MASSRVMASS SPPQPAGAGA GSSSDLGRFS SGSGIGSMNM DDIIRNIYGP EAVAGGVGVG  60
GAAEPSPTPA APAAAARRTS EEVWKEISAA GGLSVPSLPP PPPATAGGSG ARGGGGGGAA  120
EMTLEDFLAR DSGARAAAAA EGNMALGFPV PDGGDAAGAG AGGGRGSRKR ALVDPADRAV  180
MQRQKRMIKN RESAARSRDR KQAYVAELES QVTQLEEEQA ELLTEQEERR QKRLKEMMER  240
AFPVIRKKLS RDHRRTNSME W*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00648PBMTransfer from LOC_Os05g36160Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810121.10.0bZIP transcription factor 12-like isoform X1
SwissprotQ0JHF18e-62BZP12_ORYSJ; bZIP transcription factor 12
TrEMBLA0A2S3HBN40.0A0A2S3HBN4_9POAL; Uncharacterized protein
STRINGPavir.J06257.1.p1e-116(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26653786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.13e-14G-box binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]