PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C02862.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 255aa MW: 25565.7 Da PI: 6.0475

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C02862.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.4	2e-15	182	224	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR RK+a+++eLe v +Le+e +L Pahal.C02862.2 182 QRQKRMIKNRESAARSRDRKQAYVAELESQVTQLEEEQAELLT 224 89***********************************998865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-9	178	242	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.473	180	225	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.0E-13	181	225	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.38E-13	182	236	No hit	No description
CDD	cd14707	1.19E-17	182	228	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.0E-16	183	225	No hit	No description
PROSITE pattern	PS00036	0	185	200	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MASSRVMASS SPPQPAGAGA GSSSDLGRFS SGSGIGSMNM DDIIRNIYGP EAVAGGVGVG 60 GAAEPSPTPA APAAAARRTS EEVWKEISAA GGLSVPSLPP PPPATAGGSG ARGGGGGGAA 120 EMTLEDFLAR DSGARAAAAA EGNMALGFPV PDGGDAAGAG AGGGRGSRKR ALVDPADRAV 180 MQRQKRMIKN RESAARSRDR KQAYVAELES QVTQLEEEQA ELLTEQVMVI TLIILLEYSV 240 HLTTTVVVVG TRKR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00648	PBM	Transfer from LOC_Os05g36160	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810123.1	1e-177	bZIP transcription factor 12-like isoform X3
Swissprot	Q0JHF1	5e-45	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	A0A2S3HBN4	1e-152	A0A2S3HBN4_9POAL; Uncharacterized protein
STRING	Pavir.J06257.1.p	1e-89	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03970.1	2e-14	G-box binding factor 4

Link Out ? help Back to Top
Phytozome	Pahal.C02862.2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]