PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02945.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 563aa    MW: 63029.9 Da    PI: 4.6913
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02945.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.41.2e-1271935622374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++cAea+s+ +  +aq+++a+l++ ++ +gdp qR+aay++e+Laa++++s++++y+al+++e++   +  +l+a+++++e++P+++++++
  Pahal.C02945.1 193 KQLLFDCAEAISEYSVDEAQSIIAELRQKVAIQGDPSQRIAAYLVEGLAATIQSSGKGIYRALRCKEAP---TLYQLSAMQILFEICPCFRLGFM 284
                     589*****************************************************************9...89999****************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aIlea +gee vHiiDf+i+qG Q+++L+q L + +++p  lRiTgv++pes+      l+ +g+rL+k+Ae ++vpfef++ va+++ed+
  Pahal.C02945.1 285 AANYAILEACKGEEVVHIIDFGINQGSQYITLIQFLRNNSNKPRLLRITGVDDPESVhmAVGGLKVVGQRLEKLAEDCEVPFEFRA-VASNIEDV 378
                     *******************************************************99889999***********************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++ +L+++pgEal+Vn+++ lh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++Fl+rf e  +yysalfdsl+a+lpres +r++
  Pahal.C02945.1 379 TPGMLDCRPGEALIVNFAFLLHHLPDESVSMVNERDQLLRMVKGLRPKLVTLVEQDANTNTTPFLARFREVYDYYSALFDSLDATLPRESPDRMN 473
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vEr++l+reivn++aceg++r+er e ++kWr+r+ +aGF p p+++++ + +k+ll+ + ++ yr e+ ++ l +gW d++Lv+ SaW+
  Pahal.C02945.1 474 VERQCLAREIVNILACEGSDRVERYEVAGKWRARMAMAGFVPSPFNSNVINGIKSLLKSYCDR-YRFEKVHDGLHFGWGDKTLVVSSAWQ 562
                     *************************************************************66.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.609166543IPR005202Transcription factor GRAS
PfamPF035144.2E-125193562IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MSFIRQADPS ASCAESPYIH KLGPPGSVFP AQRFASGKEL LHHLPQPYKA EGYRQSDFNR  60
TAAHVFQNSF YNTDSHVESH FNEATCSPAI SNVSQQNSQS LSDNQTSDLE VEFDEDEMRL  120
KLQELEHALL DDGDEIFSDL SGIIDDEWND NMKNNDWTNT MKNIMSPDSP KESSPESSLC  180
CPDSNNGETR GPKQLLFDCA EAISEYSVDE AQSIIAELRQ KVAIQGDPSQ RIAAYLVEGL  240
AATIQSSGKG IYRALRCKEA PTLYQLSAMQ ILFEICPCFR LGFMAANYAI LEACKGEEVV  300
HIIDFGINQG SQYITLIQFL RNNSNKPRLL RITGVDDPES VHMAVGGLKV VGQRLEKLAE  360
DCEVPFEFRA VASNIEDVTP GMLDCRPGEA LIVNFAFLLH HLPDESVSMV NERDQLLRMV  420
KGLRPKLVTL VEQDANTNTT PFLARFREVY DYYSALFDSL DATLPRESPD RMNVERQCLA  480
REIVNILACE GSDRVERYEV AGKWRARMAM AGFVPSPFNS NVINGIKSLL KSYCDRYRFE  540
KVHDGLHFGW GDKTLVVSSA WQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-5519956126378Protein SCARECROW
5b3h_A6e-5519956125377Protein SCARECROW
5b3h_D6e-5519956125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807214.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2S3HBY30.0A0A2S3HBY3_9POAL; Uncharacterized protein
STRINGPavir.J01797.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]