PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C03047.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 846aa    MW: 92962.7 Da    PI: 6.2639
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C03047.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP111.84e-35164238276
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                     Cqv+gCead+ e+k yhrrh+vC  +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k
  Pahal.C03047.1 164 CQVPGCEADIRELKGYHRRHRVCLRCAHASAVMLDGVQKRYCQQCGKFHVLLDFDEDKRSCRRKLERHNKRRRRK 238
                     ************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114129.556161238IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.4E-26161225IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-33162241IPR004333Transcription factor, SBP-box
PfamPF031105.8E-27164238IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
DASDSGGGAS ADAGEQLWDW GNLLNFVQDD DSLVLPWDSD VGIGAADPTE AVAPLLPAPL  60
PQPEPEPGPV LPPPPLRVQG IGRRVRKRDP RLVCPNYLAG RVPCACPEVD EMVAAAEVED  120
VATEFLAGAR KKTKTAARRG KAGAAGGAGA AGGTVRAAAM EMKCQVPGCE ADIRELKGYH  180
RRHRVCLRCA HASAVMLDGV QKRYCQQCGK FHVLLDFDED KRSCRRKLER HNKRRRRKPD  240
SKGILDKEID EQLDLSADVS GDGELREENM EGTTSEMLET VLSNKILDRG TPAGSEDVLS  300
SPTCTQPSLQ NEQSKSVVTF AASVEACIGA KQENAKLTTN SPMHDTKSAY SSSCPTGRIS  360
FKLYDWNPAE FPRRLRHQIF EWLASMPVEL EGYIRPGCTI LTVFVAMPQH MWDKLSDDAA  420
NLLRNLVNSP NSLLLGKGAF FIHVNNMIFQ VLKDGATLMS TRLDVQSPRI DYVHPTWFEA  480
GKPVELILCG SSLDQPKFRS LLSFDGDYLK HDCHRLTSCD AIDCVENGDL ILDSQHEIFR  540
INITQSRPDI HGPAFVEVEN MFGLSNFVPI LFGSKQLCSE LERIQDALCG SSNSNLFGEL  600
PGAASDPYEH RKLQMAAMSG FLIDIGWLIR KPTHDDFKNV LSSTNIQRWV CILKFLIQND  660
FLNVLEIIVK SMENIMGSEV LSNLERGRLE DHVTAFLGYV SHARNIINSR ANSDEKTKLE  720
TRWISVSSPN QPSLGTSDPP ANETTGTGGD KNLHSANAAY EEETVPLVTR DDSHRHWCQP  780
DMNARWLKPS LVVKYPGGAT RMRLGMTVVV AAVLCFTACL VLFHPHGVGA LASPVKRYLS  840
SDSAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A1e-37163243585squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220238KRSCRRKLERHNKRRRRKP
2224236RRKLERHNKRRRR
3231238NKRRRRKP
4232237KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805456.10.0squamosa promoter-binding-like protein 9
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLA0A2T8KJS30.0A0A2T8KJS3_9POAL; Uncharacterized protein
STRINGGRMZM2G109354_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.31e-138squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]