PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C03047.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 845aa    MW: 92847.6 Da    PI: 6.3341
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C03047.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP111.84e-35163237276
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                     Cqv+gCead+ e+k yhrrh+vC  +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k
  Pahal.C03047.2 163 CQVPGCEADIRELKGYHRRHRVCLRCAHASAVMLDGVQKRYCQQCGKFHVLLDFDEDKRSCRRKLERHNKRRRRK 237
                     ************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-26160224IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.556160237IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-33161240IPR004333Transcription factor, SBP-box
PfamPF031105.8E-27163237IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
ASDSGGGASA DAGEQLWDWG NLLNFVQDDD SLVLPWDSDV GIGAADPTEA VAPLLPAPLP  60
QPEPEPGPVL PPPPLRVQGI GRRVRKRDPR LVCPNYLAGR VPCACPEVDE MVAAAEVEDV  120
ATEFLAGARK KTKTAARRGK AGAAGGAGAA GGTVRAAAME MKCQVPGCEA DIRELKGYHR  180
RHRVCLRCAH ASAVMLDGVQ KRYCQQCGKF HVLLDFDEDK RSCRRKLERH NKRRRRKPDS  240
KGILDKEIDE QLDLSADVSG DGELREENME GTTSEMLETV LSNKILDRGT PAGSEDVLSS  300
PTCTQPSLQN EQSKSVVTFA ASVEACIGAK QENAKLTTNS PMHDTKSAYS SSCPTGRISF  360
KLYDWNPAEF PRRLRHQIFE WLASMPVELE GYIRPGCTIL TVFVAMPQHM WDKLSDDAAN  420
LLRNLVNSPN SLLLGKGAFF IHVNNMIFQV LKDGATLMST RLDVQSPRID YVHPTWFEAG  480
KPVELILCGS SLDQPKFRSL LSFDGDYLKH DCHRLTSCDA IDCVENGDLI LDSQHEIFRI  540
NITQSRPDIH GPAFVEVENM FGLSNFVPIL FGSKQLCSEL ERIQDALCGS SNSNLFGELP  600
GAASDPYEHR KLQMAAMSGF LIDIGWLIRK PTHDDFKNVL SSTNIQRWVC ILKFLIQNDF  660
LNVLEIIVKS MENIMGSEVL SNLERGRLED HVTAFLGYVS HARNIINSRA NSDEKTKLET  720
RWISVSSPNQ PSLGTSDPPA NETTGTGGDK NLHSANAAYE EETVPLVTRD DSHRHWCQPD  780
MNARWLKPSL VVKYPGGATR MRLGMTVVVA AVLCFTACLV LFHPHGVGAL ASPVKRYLSS  840
DSAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A1e-37162242585squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219237KRSCRRKLERHNKRRRRKP
2223235RRKLERHNKRRRR
3230237NKRRRRKP
4231236KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805456.10.0squamosa promoter-binding-like protein 9
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLA0A2T8KJS30.0A0A2T8KJS3_9POAL; Uncharacterized protein
STRINGGRMZM2G109354_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.31e-138squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]