PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C03047.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 642aa    MW: 71791.6 Da    PI: 6.3147
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C03047.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP361.9e-116344876
                    SEEETTT--SS--S-STTTT-------S- CS
             SBP 48 rfhelsefDeekrsCrrrLakhnerrrkk 76
                    rfh l +fDe+krsCrr+L++hn+rrr+k
  Pahal.C03047.3  6 RFHVLLDFDEDKRSCRRKLERHNKRRRRK 34
                    9*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.921134IPR004333Transcription factor, SBP-box
PfamPF031101.5E-5634IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-9637IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MYFHFRFHVL LDFDEDKRSC RRKLERHNKR RRRKPDSKGI LDKEIDEQLD LSADVSGDGE  60
LREENMEGTT SEMLETVLSN KILDRGTPAG SEDVLSSPTC TQPSLQNEQS KSVVTFAASV  120
EACIGAKQEN AKLTTNSPMH DTKSAYSSSC PTGRISFKLY DWNPAEFPRR LRHQIFEWLA  180
SMPVELEGYI RPGCTILTVF VAMPQHMWDK LSDDAANLLR NLVNSPNSLL LGKGAFFIHV  240
NNMIFQVLKD GATLMSTRLD VQSPRIDYVH PTWFEAGKPV ELILCGSSLD QPKFRSLLSF  300
DGDYLKHDCH RLTSCDAIDC VENGDLILDS QHEIFRINIT QSRPDIHGPA FVEVENMFGL  360
SNFVPILFGS KQLCSELERI QDALCGSSNS NLFGELPGAA SDPYEHRKLQ MAAMSGFLID  420
IGWLIRKPTH DDFKNVLSST NIQRWVCILK FLIQNDFLNV LEIIVKSMEN IMGSEVLSNL  480
ERGRLEDHVT AFLGYVSHAR NIINSRANSD EKTKLETRWI SVSSPNQPSL GTSDPPANET  540
TGTGGDKNLH SANAAYEEET VPLVTRDDSH RHWCQPDMNA RWLKPSLVVK YPGGATRMRL  600
GMTVVVAAVL CFTACLVLFH PHGVGALASP VKRYLSSDSA L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11634KRSCRRKLERHNKRRRRKP
22032RRKLERHNKRRRR
32734NKRRRRKP
42833KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805456.10.0squamosa promoter-binding-like protein 9
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLA0A2T8KJS30.0A0A2T8KJS3_9POAL; Uncharacterized protein
STRINGSb09g020110.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.31e-109squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]