PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C03084.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 335aa MW: 37474.7 Da PI: 9.6095

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C03084.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.8	2.1e-07	130	193	1	47
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 r+ WT E+e+ v+a + ++ W Ia+t++ +Rt+kq+k++w+ y Pahal.C03084.1 130 RLDWTIAEEEKMVHAWVYHSNDsitgnnqtglsFWGQIAETFNstaepsHHRTAKQLKDHWNVY 193 789***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.226	125	194	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	9.3E-5	127	193	IPR009057	Homeodomain-like
Pfam	PF14303	3.6E-7	238	329	IPR029466	No apical meristem-associated, C-terminal domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MTGWPPDFHT FTDLLQSDGS QASPQDESSP MHRRSDVNSS PRPRALFPLL HLRLRGHLHR 60 HIIIRRRSGT EGPYPPPSYA PPPYAPPPYA PPLYSPYPPP PHAAPTVPSP VSVESQNEGA 120 GATEPKHPKR LDWTIAEEEK MVHAWVYHSN DSITGNNQTG LSFWGQIAET FNSTAEPSHH 180 RTAKQLKDHW NVYNCEVILF NGYYIQEERV RQSGADDAMV MEGAMARYEN NPKVTTAFKR 240 HHWWRAVRHE PKWAAKHGPG SGSDVSSKRT RLGVSGEYSS GGTEDTEEDN ETRPIGRDRA 300 KAAKRKEKTK WKEKGKESSS SSAVASKAFA MKNM*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008662552.1	1e-105	ribonuclease 3
TrEMBL	A0A2T7EH45	1e-172	A0A2T7EH45_9POAL; Uncharacterized protein
STRING	GRMZM2G169418_P01	1e-104	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3263	3	37

Link Out ? help Back to Top
Phytozome	Pahal.C03084.1