PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C03301.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 190aa MW: 20285.9 Da PI: 6.4936

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C03301.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115	5e-36	19	119	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk +rr+C++dC+lapyfpa++p+++a+v+++FGasnv ++l++lp +er +a++ +v eA+ r++dPvyG++g++ +lq +++ ++ ela Pahal.C03301.1 19 RCAACKNQRRRCSQDCILAPYFPASDPQRYACVQRVFGASNVARMLQNLPIHERGKAADMMVVEAHRRVQDPVYGCAGIVGRLQGEIRAVQCELA 113 6********************************************************************************************** PP DUF260 96 llkeel 101 ++++++ Pahal.C03301.1 114 RTQAQI 119 *99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.49	18	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-35	19	116	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MSTSSNTEAA AGASPGIRRC AACKNQRRRC SQDCILAPYF PASDPQRYAC VQRVFGASNV 60 ARMLQNLPIH ERGKAADMMV VEAHRRVQDP VYGCAGIVGR LQGEIRAVQC ELARTQAQIA 120 VHAAAAARAR SPVGAAQLNA PAQAALTQQQ QEQGDALAMQ QDPFHGLDPL LVDDYGVDVN 180 LVDDEMNTD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-29	10	123	1	115	LOB family transfactor Ramosa2.1
5ly0_B	3e-29	10	123	1	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806770.1	1e-135	LOB domain-containing protein 24-like
Swissprot	P59467	4e-39	LBD23_ARATH; LOB domain-containing protein 23
Swissprot	P59468	3e-39	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A2S3HD56	1e-134	A0A2S3HD56_9POAL; Uncharacterized protein
STRING	Pavir.J09684.1.p	8e-91	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5282	35	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-37	LBD family protein

Link Out ? help Back to Top
Phytozome	Pahal.C03301.1