PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C03309.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 191aa    MW: 19735.3 Da    PI: 8.1898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C03309.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.8e-2052101356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+G+r+++ +grW+AeIrdp++    +r++lg++ t+e+Aa+a++ a+++++g+
  Pahal.C03309.1  52 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATPEDAARAYDVAAREIRGA 101
                     9*******.**********954...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-2251109IPR016177DNA-binding domain
PfamPF008476.7E-1451100IPR001471AP2/ERF domain
PROSITE profilePS5103224.7951108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-3151108IPR001471AP2/ERF domain
SMARTSM003801.1E-3451114IPR001471AP2/ERF domain
CDDcd000184.62E-2652107No hitNo description
PRINTSPR003671.5E-105263IPR001471AP2/ERF domain
PRINTSPR003671.5E-107490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MCGGAIIADF VPAGARRPAS SITGDTASIL SGEEELVKAE ARVPAPGRKT AYRGIRRRPW  60
GRWAAEIRDP RKGARVWLGT YATPEDAARA YDVAAREIRG AKAKLNFPPA VGAGAPAAKR  120
RRRVPAAEES SGSSSYPAAA VMGPPGVGGA ETLRDCMSGL EAFLGLEDAD AAPGDGADVE  180
AWDAVDLMFA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2152114669ATERF1
3gcc_A3e-2152114669ATERF1
5wx9_A1e-20521151579Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123KRRRRV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0643972e-74BT064397.1 Zea mays full-length cDNA clone ZM_BFc0165J07 mRNA, complete cds.
GenBankBT0873912e-74BT087391.1 Zea mays full-length cDNA clone ZM_BFb0059P19 mRNA, complete cds.
GenBankEU9518942e-74EU951894.1 Zea mays clone 1062095 ethylene responsive element binding protein 2 mRNA, complete cds.
GenBankHQ8587612e-74HQ858761.1 Zea mays clone UT1602 AP2-EREBP transcription factor mRNA, partial cds.
GenBankJX4699162e-74JX469916.1 Zea mays subsp. mays clone UT3172 MYB-related transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808872.11e-129ethylene-responsive transcription factor ERF071-like
TrEMBLA0A2S3HCV51e-127A0A2S3HCV5_9POAL; Uncharacterized protein
TrEMBLA0A2T7EEX91e-127A0A2T7EEX9_9POAL; Uncharacterized protein
STRINGPavir.J05942.1.p6e-92(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.18e-34ethylene-responsive element binding protein