PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C03567.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 260aa MW: 30235.4 Da PI: 7.8418

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C03567.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.8	2.8e-21	12	100	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 f+ +Y+ + GF+vrk +++k+k +g++ + ++vC +eg+r+++k++ + ++ +raetrt+C+ ++ + +++ +++++v++l leHnH l+ Pahal.C03567.1 12 FWISYGGQKGFEVRKMYTNKRKSDGKVRSCRYVCANEGHRKKDKRD-HLTKCPRAETRTDCQVRMGLIMDReKETYKVADLILEHNHMLQ 100 999**************************************999.999***********9888777*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-16	12	99	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEFNTIDEAW MFWISYGGQK GFEVRKMYTN KRKSDGKVRS CRYVCANEGH RKKDKRDHLT 60 KCPRAETRTD CQVRMGLIMD REKETYKVAD LILEHNHMLQ LPQTSHLMVS QRKILELQGF 120 EIETADDAGI GPKAAHELAC VQVGGSSNLS YTLRDHKNYL RAKRQREMAY DQAGSMLMYF 180 QDKITENPSF QYALQMDIEE QIANIFWVDA KMLTDYTYFG DVVSFDTTFG TNKESRPFGV 240 FVGFNQFRET VVFWCRSLI*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025876513.1	1e-170	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A2S3HDK1	0.0	A0A2S3HDK1_9POAL; Uncharacterized protein
STRING	OS10T0571900-00	1e-168	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-42	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pahal.C03567.1