PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C03622.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 378aa    MW: 40787.4 Da    PI: 4.9981
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C03622.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20129180156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     +gy+GVr++  +g+WvAeIr+p   + r  r +lg+f tae+Aa+a+++a+++++ge
  Pahal.C03622.1 129 CGYRGVRQRT-WGKWVAEIREP---N-RvNRLWLGTFPTAEDAARAYDEAARAMYGE 180
                     79*****999.**********8...2.489************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.30E-29129187No hitNo description
PfamPF008471.1E-13129180IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-21130188IPR016177DNA-binding domain
SMARTSM003805.1E-34130193IPR001471AP2/ERF domain
PROSITE profilePS5103222.721130187IPR001471AP2/ERF domain
PRINTSPR003671.4E-10131142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-32131188IPR001471AP2/ERF domain
PRINTSPR003671.4E-10153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MTVDQKQAMP MQAQALQPGR TFGAEGSTVV LGSVRTIGGR ALRSNEYELS VEQKSQGDAP  60
PVASNLWKKR PRRSRDGPTS VAAVIKRWAE HNKLLEHGAE GAKRARKAPA KGSKKGCMKG  120
KGGPENTQCG YRGVRQRTWG KWVAEIREPN RVNRLWLGTF PTAEDAARAY DEAARAMYGE  180
VARTNFPRQS AATSSQVAPA AASTQVAAVV DSLLPSTSCE STTTSNHSDI ASTALKPEVA  240
DISSSLKVEY PMEAGSHRSE MISGSWVQHE DSHPSSTQAS TPNVADKEVF EPLEPIANIP  300
EGEDDGFDIE EMLRMMEADP QNKGGVDASM GQPFYLDGLD SSVLESMLQS EPEPYSMSEE  360
TDMFLAGFES PGFFEGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-151311891574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810002.10.0dehydration-responsive element-binding protein 2B-like isoform X2
SwissprotQ5W6R45e-79DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLA0A2S3HDG00.0A0A2S3HDG0_9POAL; Uncharacterized protein
STRINGPavir.Cb01298.1.p1e-175(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115153037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.22e-28DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]