PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C03772.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 279aa    MW: 29742.3 Da    PI: 9.6155
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C03772.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.82.3e-45141511128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     lppGfrF+Ptdeelvv+yL++++ +++l+++  i++v+i+ ++P+dL p     +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k+v++
  Pahal.C03772.1  14 LPPGFRFRPTDEELVVHYLRRRALASPLPAAVDIPDVRILAHDPSDLlP--PGWSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEKPVVV 106
                     79***************************9666**************43..3447899************************************9 PP

             NAM  95 k...........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +           +  lvg+k++Lvfy+g+ p+g+ktdWvmheyrl
  Pahal.C03772.1 107 AvparaggqgkaQAVLVGMKRSLVFYRGKPPTGSKTDWVMHEYRL 151
                     9999887765444444***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-499185IPR003441NAC domain
PROSITE profilePS5100548.31414185IPR003441NAC domain
PfamPF023652.0E-2615151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEAAKEPAVT KPRLPPGFRF RPTDEELVVH YLRRRALASP LPAAVDIPDV RILAHDPSDL  60
LPPGWSEQER YFFTCKEAKY VKGRRANRAT GAGYWKATGK EKPVVVAVPA RAGGQGKAQA  120
VLVGMKRSLV FYRGKPPTGS KTDWVMHEYR LAGAGLAPCR RAAGSQAAEA SRPAEGWVLC  180
RVFRKKGSAS ANAAAAAAAD AEASPADGGS DGEAEDAGEE EGGRTFIDFF ARADADAAGR  240
RLQQQERRAS SPVVSSSCLT DASHEQHGRE QETTSRGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-38918912169NO APICAL MERISTEM PROTEIN
1ut4_B4e-38918912169NO APICAL MERISTEM PROTEIN
1ut7_A4e-38918912169NO APICAL MERISTEM PROTEIN
1ut7_B4e-38918912169NO APICAL MERISTEM PROTEIN
4dul_A4e-38918912169NAC domain-containing protein 19
4dul_B4e-38918912169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809222.10.0NAC domain-containing protein 83
SwissprotQ9FY937e-56NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2S3HE730.0A0A2S3HE73_9POAL; Uncharacterized protein
STRINGPavir.Cb00769.1.p1e-137(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-46NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]