PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C03908.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 250aa    MW: 26496.8 Da    PI: 8.846
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C03908.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.91.2e-33221511128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevl 93 
                     lp GfrF+Ptdeel+ +yL++k+ + +l++  +i+++++ +++PwdL p +    + e +fF++ +++   +g  + ra+ +g+W+ +gk+k v 
  Pahal.C03908.1  22 LPIGFRFRPTDEELLLHYLRRKALACPLPA-GIIPDANLARLHPWDLlPPAGGDADGERFFFHRPATRCWrKGGGAARAAGTGVWRPSGKEKLVA 115
                     699***************************.99**************5333334455888888877666527999******************** PP

             NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s   ++ vg+k+tLvf +gr + +++tdW mheyrl
  Pahal.C03908.1 116 SPrCKRPVGTKRTLVFCRGRGRGAVRTDWAMHEYRL 151
                     9877889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-4513189IPR003441NAC domain
PROSITE profilePS5100542.87622190IPR003441NAC domain
PfamPF023659.4E-2123151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEGRPGGAWR MQGPAGAPVA GLPIGFRFRP TDEELLLHYL RRKALACPLP AGIIPDANLA  60
RLHPWDLLPP AGGDADGERF FFHRPATRCW RKGGGAARAA GTGVWRPSGK EKLVASPRCK  120
RPVGTKRTLV FCRGRGRGAV RTDWAMHEYR LLPAGIHPFH GCAAAGNPTA AHVSCLGAAA  180
DWVVCRIFKR TKPAAHRGRE DDDAEERPSS PSSASSCVTD TAETGDQEHD DDEGSSSSNG  240
GSSCSVASN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-262219417169NO APICAL MERISTEM PROTEIN
1ut4_B2e-262219417169NO APICAL MERISTEM PROTEIN
1ut7_A2e-262219417169NO APICAL MERISTEM PROTEIN
1ut7_B2e-262219417169NO APICAL MERISTEM PROTEIN
4dul_A2e-262219417169NAC domain-containing protein 19
4dul_B2e-262219417169NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9699702e-77EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817662.11e-180NAC domain-containing protein 83-like isoform X1
TrEMBLA0A2S3HP121e-179A0A2S3HP12_9POAL; Uncharacterized protein
STRINGPavir.Eb03721.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-33NAC domain containing protein 47