PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C03921.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 289aa    MW: 31379.5 Da    PI: 9.5834
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C03921.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.71.6e-2326111185
        trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                     rWt++e+l+Li+arr me+r      +  p+W++vs+++r++g+er+p qC+++w nl+++ kki ++e+k  +  ++ +  f ++
  Pahal.C03921.1  26 RWTRHETLVLIQARRAMERRGLPlPVRPRPKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEGKAGAAPTQLHESFWDM 111
                     8*******************998345779*****************************************9977666777777777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.051984IPR017877Myb-like domain
SuperFamilySSF466898.97E-52392IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-42683IPR009057Homeodomain-like
PfamPF138372.0E-102698No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MMSANENSPP VEAAAATSMP RSRLPRWTRH ETLVLIQARR AMERRGLPLP VRPRPKWAAV  60
SAYCRRHGVE RGPMQCRKRW GNLSWDLKKI VAWEGKAGAA PTQLHESFWD MRGDQRRARQ  120
LPSSFDREVY DALLCGTSAA LPDFGDGELD GLCRQPPIMV MPISARKYEP PPASSEHECS  180
GPVTESDKKA GAAASDKNST SQHDGGGGFK DSDATFVAEA EGTTTATPAA TVSIGKQVIE  240
ALERGNRALA QQLEAQKSSW RADREQRAAL LGALDRLAGA VARIADKL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280311e-155KJ728031.1 Zea mays clone pUT6171 trihelix transcription factor (THX11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819294.10.0trihelix transcription factor ASR3-like
TrEMBLA0A2S3HNF50.0A0A2S3HNF5_9POAL; Uncharacterized protein
STRINGPavir.Ea03865.1.p1e-178(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-35Trihelix family protein