PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C03966.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 161aa MW: 17521.8 Da PI: 11.6624

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C03966.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	53.6	8.6e-17	47	126	38	105
TCP 38 eLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...............kaaksaa.kskksqksaa 105 eLG+++d++tieWLlqqa+pai ++tgt++ +a+ + s + s ++++ ++ ++++ ++ +++ + Pahal.C03966.1 47 ELGHKSDGETIEWLLQQAEPAILAATGTGTMPANYS---SLNISIR-PGEPpppltlpaprrsrrsRSTRTTTrRPRAARHARH 126 9***************************88888444...2222222.1111344444444443322111111112222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.7E-14	47	93	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MRRHSPVEEV ECRPKLWPGY PISNENPNTP RVPAGCKKVP SEATPHELGH KSDGETIEWL 60 LQQAEPAILA ATGTGTMPAN YSSLNISIRP GEPPPPLTLP APRRSRRSRS TRTTTRRPRA 120 ARHARHDGLP PQPPPATATG PQRRRRQHAE ALQGGPFQGG *

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ726951	2e-79	KJ726951.1 Zea mays clone pUT3645 TCP transcription factor (TCP12) mRNA, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	9e-22	TCP family protein

Link Out ? help Back to Top
Phytozome	Pahal.C03966.1